ubiquitin D

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Synonym

UBD, Ubiquitin D, Ubiquitin-like protein FAT10, Diubiquitin, ubiquitin D, UBD-3, FAT10

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST nodata
GeneChip cerebrum:4.34 cerebellum:4.33 brain stem:4.31 corpus callosum/glia:4.31 pineal gland:- peripheral nerve:4.92 spine:4.38 retina:- eye:- artery/aorta:4.54 vein:4.86 lymphnode:8.86 peripheral blood:- spleen:6.95 thymus:8.31 bone marrow:4.64 adipose:5.49 bone:- skin:4.89
CAGE cerebrum:0.06 cerebellum:- brain stem:0.15 corpus callosum/glia:0.39 pineal gland:0.35 peripheral nerve:- spine:0.55 retina:- eye:- artery/aorta:1.65 vein:4.37 lymphnode:4.41 peripheral blood:- spleen:3.75 thymus:3.96 bone marrow:- adipose:2.27 bone:- skin:-
RNA-seq cerebrum:0 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:0 peripheral blood:- spleen:- thymus:- bone marrow:- adipose:0 bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST nodata
GeneChip uterus:4.76 placenta:4.58 prostate:5.50 ovary:4.45 testis:4.16 heart:4.77 muscle:4.38 esophagus:4.93 stomach:6.91 intestine:6.69 colon:5.59 liver/hepato:6.69 lung:5.27 bladder:- kidney:5.83 pituitary:4.40 thyroid/parathyroid:5.36 adrenal gland:4.26 pancreas:6.66 breast:5.87 salivary:5.39
CAGE uterus:0.84 placenta:0.48 prostate:2.67 ovary:0.72 testis:0.61 heart:0.91 muscle:1.05 esophagus:2.07 stomach:- intestine:1.60 colon:0.95     liver/hepato:3.11    lung:2.49 bladder:0.78 kidney:3.43 pituitary:0.24 thyroid/parathyroid:1.97 adrenal gland:- pancreas:2.90 breast:0.90 salivary:2.31
RNA-seq uterus:- placenta:- prostate:0 ovary:0 testis:0 heart:0 muscle:0 esophagus:- stomach:- intestine:- colon:0     liver/hepato:0        lung:0    bladder:- kidney:0 pituitary:- thyroid/parathyroid:0 adrenal gland:0 pancreas:- breast:0 salivary:-

Gene Information

IDs

Refseq ID NM_006398
Gene ID 10537
Unigene ID -
Probe set ID 205890_s_at  [HG-U133_Plus_2]
Ensembl ID ENSG00000213886
ENSG00000231968
GTEx ID ENSG00000213886
ENSG00000231968

Orthologous Gene

Mouse[1]  NM_023137
Rat[1]  NM_053299

Chromosomal Region

HSCHR6_MHC_APD  [29,523,504  -  29,527,818]
HSCHR6_MHC_MANN  [29,522,994  -  29,527,308]
HSCHR6_MHC_MCF  [29,523,204  -  29,527,517]
HSCHR6_MHC_DBB  [29,523,343  -  29,527,656]
HSCHR6_MHC_COX  [29,519,995  -  29,524,308]
6p22.1  [29,523,292  -  29,527,702]
HSCHR6_MHC_QBL  [29,523,310  -  29,527,624]

Gene Family (Interpro ID)

IPR000626  Ubiquitin
IPR019956  Ubiquitin subgroup
IPR019955  Ubiquitin supergroup

Link to Pubmed  (Pubmed ID)

8662070
9368598
9525617
10200259
11087859
11087860
11112487
11991975
12477932
12610113
12730673
12883554
14574404
14757770
15489334
15761153
15831455
15994808
16344560
16495226
16495380
16707496
16712791
16775314
16808324
17067581
17889673
17971048
18574467
19028597
19033385
19185524
19303852
19437562
19726511
19808075
19851445
19959714
20587610
20975683
21090589
21121635
21351261
21396347
21631897
21757738
22025632
22072791
22164771
22281738
22292662
22347407
22349260
22402871
22412388
22427669
22434192
22569823
22797925
23036196
23416168
23602568
23812429
23862649
24440736
24528925

Gene Ontology  (GO ID)

Biological Process

GO:0070842  aggresome assembly
GO:0043011  myeloid dendritic cell differentiation
GO:0043065  positive regulation of apoptosis
GO:0043123  positive regulation of I-kappaB kinase/NF-kappaB cascade
GO:0032446  protein modification by small protein conjugation
GO:0016567  protein ubiquitination
GO:0006508  proteolysis
GO:0034341  response to interferon-gamma
GO:0010243  response to organic nitrogen
GO:0034612  response to tumor necrosis factor
GO:0006511  ubiquitin-dependent protein catabolic process

Cellular Component

GO:0016235  aggresome
GO:0005737  cytoplasm
GO:0005634  nucleus

Molecular Function

GO:0070628  proteasome binding
GO:0005515  protein binding