tudor domain containing 1

 jump to detail

Synonym

tudor domain containing 1, TDRD1, FLJ21082, Tudor domain-containing protein 1

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST cerebrum:3.60 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:30.70 spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:- peripheral blood:- spleen:- thymus:- bone marrow:- adipose:- bone:- skin:-
GeneChip nodata
CAGE cerebrum:0.35 cerebellum:- brain stem:0.19 corpus callosum/glia:0.07 pineal gland:0.26 peripheral nerve:- spine:0.39 retina:- eye:- artery/aorta:0.79 vein:0 lymphnode:0.09 peripheral blood:- spleen:0.95 thymus:0.18 bone marrow:- adipose:0.14 bone:- skin:-
RNA-seq cerebrum:0.17 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:0.12 peripheral blood:- spleen:- thymus:- bone marrow:- adipose:0.08 bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST uterus:- placenta:- prostate:- ovary:- testis:112.50 heart:- muscle:- esophagus:- stomach:- intestine:- colon:-     liver/hepato:-        lung:-    bladder:- kidney:- pituitary:- thyroid/parathyroid:- adrenal gland:- pancreas:- breast:- salivary:-
GeneChip nodata
CAGE uterus:0.31 placenta:0 prostate:1.38 ovary:0.52 testis:3.51 heart:0.69 muscle:0.25 esophagus:0.33 stomach:- intestine:0.38 colon:0.12     liver/hepato:0.46    lung:0.18 bladder:0.09 kidney:0.27 pituitary:0.42 thyroid/parathyroid:0.12 adrenal gland:- pancreas:0 breast:0 salivary:0
RNA-seq uterus:- placenta:- prostate:0.40 ovary:0.17 testis:3.47 heart:0.34 muscle:0 esophagus:- stomach:- intestine:- colon:0.14     liver/hepato:0.00        lung:0.08    bladder:- kidney:0.13 pituitary:- thyroid/parathyroid:0.03 adrenal gland:0.09 pancreas:- breast:0.13 salivary:-

Gene Information

IDs

Refseq ID NM_198795
Gene ID 56165
Unigene ID Hs.333132
Probe set ID -
Ensembl ID ENSG00000095627
GTEx ID ENSG00000095627

Orthologous Gene

Mouse[4]  NM_001002238, NM_001002240, NM_001002241, NM_031387
Rat[1]  NM_001106202, NM_001002240, NM_001002241, NM_031387

Chromosomal Region

10q25.3  [115,939,029  -  115,992,063]

Gene Family (Interpro ID)

IPR002999  Tudor domain
IPR018351  Tudor subgroup

Link to Pubmed  (Pubmed ID)

11279525
12477932
14702039
16385451
16712791
17474147
19156129
21139048
22360420
23319146
23555854
24457600

Gene Ontology  (GO ID)

Biological Process

GO:0043046  DNA methylation during gametogenesis
GO:0031047  gene silencing by RNA
GO:0007281  germ cell development
GO:0007126  meiosis
GO:0007275  multicellular organismal development
GO:0034587  piRNA metabolic process
GO:0007283  spermatogenesis

Cellular Component

GO:0033391  chromatoid body
GO:0005737  cytoplasm
GO:0043186  P granule

Molecular Function

GO:0046872  metal ion binding