SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2

jump to detail

Synonym

BAF170, CRACC2, BRG1-associated factor 170, SMARCC2, SWI/SNF complex 170 kDa subunit, Rsc8

normal 40 tissues
cell lines, primary cells, adult tissues and fetal tissues (FANTOM5 CAGE)

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain

blood

connective

EST

cerebrum:126.80

cerebellum:176.30

brain stem:-

corpus callosum/glia:-

pineal gland:-

peripheral nerve:92

spine:-

retina:118.60

eye:152.80

artery/aorta:-

vein:-

lymphnode:121.30

peripheral blood:72.90

spleen:113.40

thymus:244.80

bone marrow:118.10

adipose:-

bone:102.40

skin:168

GeneChip

cerebrum:8.04

cerebellum:8.15

brain stem:7.89

corpus callosum/glia:7.90

pineal gland:-

peripheral nerve:7.69

spine:7.85

retina:-

eye:-

artery/aorta:7.95

vein:7.70

lymphnode:7.81

peripheral blood:-

spleen:7.82

thymus:7.62

bone marrow:7.47

adipose:7.76

bone:-

skin:7.63

CAGE

cerebrum:3.94

cerebellum:-

brain stem:3.92

corpus callosum/glia:4.03

pineal gland:3.99

peripheral nerve:-

spine:3.65

retina:-

eye:-

artery/aorta:3.89

vein:3.63

lymphnode:3.40

peripheral blood:-

spleen:3.48

thymus:3.50

bone marrow:-

adipose:3.79

bone:-

skin:-

RNA-seq

cerebrum:0.93

cerebellum:-

brain stem:-

corpus callosum/glia:-

pineal gland:-

peripheral nerve:-

spine:-

retina:-

eye:-

artery/aorta:-

vein:-

lymphnode:0.14

peripheral blood:-

spleen:-

thymus:-

bone marrow:-

adipose:0.13

bone:-

skin:-

reproductive

muscular

alimentary

liver

lung

urinary

endo/exo-crine

EST

uterus:100.20

placenta:109.30

prostate:90.10

ovary:335.40

testis:47.60

heart:89.40

muscle:-

esophagus:-

stomach:-

intestine:97.20

colon:93.30

liver/hepato:42.20

lung:88

bladder:125.60

kidney:72.80

pituitary:232

thyroid/parathyroid:818.70

adrenal gland:-

pancreas:80

breast:83.60

salivary:-

GeneChip

uterus:7.61

placenta:7.14

prostate:7.57

ovary:7.68

testis:7.69

heart:7.51

muscle:7.34

esophagus:7.41

stomach:7.43

intestine:7.37

colon:7.64

liver/hepato:7.46

lung:7.77

bladder:-

kidney:7.77

pituitary:7.89

thyroid/parathyroid:8.06

adrenal gland:7.81

pancreas:7.42

breast:8.08

salivary:7.59

CAGE

uterus:3.86

placenta:3.20

prostate:3.80

ovary:3.71

testis:3.01

heart:3.34

muscle:3.18

esophagus:3.40

stomach:-

intestine:3.47

colon:3.58

liver/hepato:2.45

lung:3.59

bladder:3.39

kidney:3.27

pituitary:3.38

thyroid/parathyroid:3.54

adrenal gland:-

pancreas:3.52

breast:3.73

salivary:3.83

RNA-seq

uterus:-

placenta:-

prostate:0.63

ovary:0.62

testis:1.01

heart:0.09

muscle:1.39

esophagus:-

stomach:-

intestine:-

colon:0.42

liver/hepato:0.53

lung:0.39

bladder:-

kidney:0.14

pituitary:-

thyroid/parathyroid:1.07

adrenal gland:0.13

pancreas:-

breast:0.21

salivary:-

IDs

Refseq ID	NM_001130420
Gene ID	6601
Unigene ID	Hs.236030
Probe set ID	201320_at [HG-U133_Plus_2]
Ensembl ID	ENSG00000139613
GTEx ID	ENSG00000139613

Orthologous Gene

Mouse[3]	NM_001114096, NM_001114097, NM_198160
Rat[3]	NM_001114096, NM_001114097, NM_198160

Chromosomal Region

12q13.2 [56,556,767 - 56,583,351]

Search genes near this gene
- Between -5kb and +5kb
- Between -10kb and +10kb

Gene Family (Interpro ID)

IPR000953	Chromo domain
IPR009057	Homeodomain-like
IPR012287	Homeodomain-related
IPR017877	MYB-like
IPR001005	SANT, DNA-binding

GO:0006338	chromatin remodeling
GO:0045892	negative regulation of transcription, DNA-dependent
GO:0007399	nervous system development
GO:0006337	nucleosome disassembly
GO:0045893	positive regulation of transcription, DNA-dependent
GO:0006357	regulation of transcription from RNA polymerase II promoter
GO:0006351	transcription, DNA-dependent

GO:0005730	nucleolus
GO:0005634	nucleus
GO:0016514	SWI/SNF complex
GO:0017053	transcriptional repressor complex

GO:0003682	chromatin binding
GO:0003677	DNA binding
GO:0005515	protein binding
GO:0003713	transcription coactivator activity

SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2

Synonym

Expression Pattern

Choropleth map on BodyParts3D

Classification in 40 Organs

Gene Information

IDs

Orthologous Gene

Chromosomal Region

Gene Family (Interpro ID)

Link to Pubmed (Pubmed ID)

Gene Ontology (GO ID)

Biological Process

Cellular Component

Molecular Function