synovial sarcoma translocation, chromosome 18

Synonym

SYT protein, synovial sarcoma translocation, chromosome 18, SYT, SS18, Synovial sarcoma, translocated to X chromosome, MGC116875, SSXT, SSXT protein

normal 40 tissues
cell lines, primary cells, adult tissues and fetal tissues (FANTOM5 CAGE)

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain

blood

connective

EST

cerebrum:34.40

cerebellum:37.80

brain stem:-

corpus callosum/glia:58.30

pineal gland:-

peripheral nerve:184

spine:-

retina:118.60

eye:23.50

artery/aorta:60

vein:66.60

lymphnode:40.40

peripheral blood:18.20

spleen:37.80

thymus:90.20

bone marrow:19.70

adipose:40.30

bone:64

skin:115.20

GeneChip

cerebrum:4.94

cerebellum:5

brain stem:5.15

corpus callosum/glia:5.07

pineal gland:-

peripheral nerve:4.46

spine:4.86

retina:-

eye:-

artery/aorta:4.56

vein:5.06

lymphnode:4.63

peripheral blood:-

spleen:4.58

thymus:5.17

bone marrow:4.76

adipose:4.80

bone:-

skin:5.17

CAGE

cerebrum:4.18

cerebellum:-

brain stem:4.40

corpus callosum/glia:4.59

pineal gland:4.31

peripheral nerve:-

spine:4.46

retina:-

eye:-

artery/aorta:4.72

vein:4.53

lymphnode:4.44

peripheral blood:-

spleen:4.32

thymus:4.27

bone marrow:-

adipose:4.42

bone:-

skin:-

RNA-seq

cerebrum:2.50

cerebellum:-

brain stem:-

corpus callosum/glia:-

pineal gland:-

peripheral nerve:-

spine:-

retina:-

eye:-

artery/aorta:-

vein:-

lymphnode:4.25

peripheral blood:-

spleen:-

thymus:-

bone marrow:-

adipose:4.12

bone:-

skin:-

reproductive

muscular

alimentary

liver

lung

urinary

endo/exo-crine

EST

uterus:63.80

placenta:80.10

prostate:56.30

ovary:186.30

testis:51.90

heart:25.50

muscle:20.10

esophagus:-

stomach:106.20

intestine:64.80

colon:84.80

liver/hepato:42.20

lung:58.70

bladder:125.60

kidney:31.20

pituitary:116

thyroid/parathyroid:-

adrenal gland:50.80

pancreas:62.20

breast:111.50

salivary:328.40

GeneChip

uterus:5.07

placenta:5.39

prostate:4.95

ovary:5.37

testis:5.28

heart:5.10

muscle:4.95

esophagus:5.05

stomach:4.89

intestine:5.09

colon:5.27

liver/hepato:4.69

lung:4.66

bladder:-

kidney:4.78

pituitary:4.40

thyroid/parathyroid:4.57

adrenal gland:4.74

pancreas:4.95

breast:4.49

salivary:4.94

CAGE

uterus:4.51

placenta:4.79

prostate:4.29

ovary:4.60

testis:4.42

heart:4.24

muscle:3.49

esophagus:4.39

stomach:-

intestine:3.95

colon:3.97

liver/hepato:4.33

lung:4.26

bladder:4.21

kidney:4.46

pituitary:4.96

thyroid/parathyroid:4.36

adrenal gland:-

pancreas:3.90

breast:4.35

salivary:4.32

RNA-seq

uterus:-

placenta:-

prostate:4.09

ovary:4.67

testis:3.93

heart:2.88

muscle:1.69

esophagus:-

stomach:-

intestine:-

colon:3.82

liver/hepato:3.78

lung:4.08

bladder:-

kidney:4.72

pituitary:-

thyroid/parathyroid:4.55

adrenal gland:4.36

pancreas:-

breast:4.33

salivary:-

IDs

Refseq ID	NM_005637
Gene ID	6760
Unigene ID	Hs.404263
Probe set ID	216684_s_at [HG-U133_Plus_2]
Ensembl ID	ENSG00000141380
GTEx ID	ENSG00000141380

Orthologous Gene

Mouse[12]	NM_001161369, NM_001161370, NM_009280
Rat[1]	NM_001100900, NM_001161370, NM_009280

GO:0000902	cell morphogenesis
GO:0048013	ephrin receptor signaling pathway
GO:0000226	microtubule cytoskeleton organization
GO:0045944	positive regulation of transcription from RNA polymerase II promoter
GO:0007243	protein kinase cascade
GO:0042493	response to drug
GO:0006351	transcription, DNA-dependent

GO:0005881	cytoplasmic microtubule
GO:0005634	nucleus

GO:0030374	ligand-dependent nuclear receptor transcription coactivator activity
GO:0005515	protein binding

synovial sarcoma translocation, chromosome 18

Synonym

Expression Pattern

Choropleth map on BodyParts3D

Classification in 40 Organs

Gene Information

IDs

Orthologous Gene

Chromosomal Region

Gene Family (Interpro ID)

Link to Pubmed (Pubmed ID)

Gene Ontology (GO ID)

Biological Process

Cellular Component

Molecular Function