LIM homeobox protein 6

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Synonym

LIM/homeobox protein Lhx6, Lhx6, LIM homeobox protein 6

normal 40 tissues
developmental tissues and primary cells（FANTOM5 CAGE）

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain

blood

connective

EST

cerebrum:17.40

cerebellum:-

brain stem:31.80

corpus callosum/glia:-

pineal gland:257.80

peripheral nerve:-

spine:-

retina:-

eye:-

artery/aorta:-

vein:-

lymphnode:-

peripheral blood:-

spleen:-

thymus:-

bone marrow:-

adipose:-

bone:12.50

skin:-

GeneChip

cerebrum:6.05

cerebellum:4.34

brain stem:-

corpus callosum/glia:-

pineal gland:-

peripheral nerve:4.45

spine:4.39

retina:4.27

eye:4.63

artery/aorta:-

vein:4.82

lymphnode:4.20

peripheral blood:-

spleen:4.47

thymus:-

bone marrow:4.20

adipose:5.18

bone:4.30

skin:4.62

CAGE

cerebrum:0.74

cerebellum:-

brain stem:0.64

corpus callosum/glia:-

pineal gland:-

peripheral nerve:-

spine:0

retina:-

eye:-

artery/aorta:1.50

vein:-

lymphnode:0.71

peripheral blood:-

spleen:0.29

thymus:0

bone marrow:-

adipose:-

bone:0.63

skin:0.91

RNA-seq

cerebrum:1.51

cerebellum:-

brain stem:-

corpus callosum/glia:-

pineal gland:-

peripheral nerve:-

spine:-

retina:-

eye:-

artery/aorta:-

vein:-

lymphnode:-

peripheral blood:-

spleen:-

thymus:-

bone marrow:-

adipose:-

bone:-

skin:-

reproductive

muscular

alimentary

liver

lung

urinary

endo/exo-crine

EST

uterus:-

placenta:-

prostate:30.90

ovary:-

testis:-

heart:37.20

muscle:-

esophagus:-

stomach:-

intestine:-

colon:-

liver/hepato:-

lung:30.10

bladder:-

kidney:-

pituitary:-

thyroid/parathyroid:-

adrenal gland:-

pancreas:-

breast:-

salivary:-

GeneChip

uterus:4.75

placenta:5.38

prostate:4.51

ovary:4.67

testis:4.61

heart:5.27

muscle:4.76

esophagus:-

stomach:4.53

intestine:4.31

colon:-

liver/hepato:5.51

lung:4.44

bladder:4.42

kidney:4.57

pituitary:4.58

thyroid/parathyroid:-

adrenal gland:4.38

pancreas:5.08

breast:5.01

salivary:4.69

CAGE

uterus:0.44

placenta:0.70

prostate:0.20

ovary:1.05

testis:0

heart:-

muscle:-

esophagus:-

stomach:0

intestine:0

colon:0

liver/hepato:0.26

lung:0.83

bladder:1.20

kidney:-

pituitary:0.29

thyroid/parathyroid:-

adrenal gland:0.26

pancreas:0.84

breast:0.92

salivary:-

RNA-seq

uterus:-

placenta:-

prostate:-

ovary:-

testis:-

heart:-

muscle:0.99

esophagus:-

stomach:-

intestine:-

colon:-

liver/hepato:2.31

lung:-

bladder:-

kidney:-

pituitary:-

thyroid/parathyroid:-

adrenal gland:-

pancreas:-

breast:-

salivary:-

IDs

Refseq ID	NM_001083125
Gene ID	16874
Unigene ID	Mm.12881
Probe set ID	1425094_a_at [Mouse430_2]
Ensembl ID	ENSMUSG00000026890

Orthologous Gene

Human[2]	NM_001242333, NM_001242334, NM_001242335, NM_014368, NM_199160
Rat[1]	NM_001107837, NM_001242334, NM_001242335, NM_014368, NM_199160

Chromosomal Region

Gene Family (Interpro ID)

IPR001356	Homeobox
IPR009057	Homeodomain-like
IPR012287	Homeodomain-related

Gene Ontology (GO ID)

Biological Process

GO:0030154	cell differentiation
GO:0048469	cell maturation
GO:0021853	cerebral cortex GABAergic interneuron migration
GO:0021895	cerebral cortex neuron differentiation
GO:0021799	cerebral cortex radially oriented cell migration
GO:0021800	cerebral cortex tangential migration
GO:0021884	forebrain neuron development
GO:0021877	forebrain neuron fate commitment
GO:0007275	multicellular organismal development
GO:0007399	nervous system development
GO:0006355	regulation of transcription, DNA-dependent
GO:0006351	transcription, DNA-dependent

Cellular Component

GO:0005634

nucleus

Molecular Function

GO:0003677	DNA binding
GO:0046872	metal ion binding
GO:0005515	protein binding
GO:0043565	sequence-specific DNA binding
GO:0003700	transcription factor activity
GO:0008270	zinc ion binding

LIM homeobox protein 6

Synonym

Expression Pattern

Choropleth map on BodyParts3D

Classification in 40 Organs

Gene Information

IDs

Orthologous Gene

Chromosomal Region

Gene Family (Interpro ID)

Link to Pubmed (Pubmed ID)

Gene Ontology (GO ID)

Biological Process

Cellular Component

Molecular Function