trinucleotide repeat containing 6b

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Synonym

MGC28739, Tnrc6b, trinucleotide repeat containing 6b, D230019K20Rik, A730065C02Rik

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST cerebrum:66 cerebellum:239.50 brain stem:190.70 corpus callosum/glia:- pineal gland:- peripheral nerve:76.40 spine:- retina:96.40 eye:106.40 artery/aorta:84.40 vein:- lymphnode:21.60 peripheral blood:43.10 spleen:105.30 thymus:138.30 bone marrow:- adipose:- bone:62.60 skin:71.30
GeneChip cerebrum:8.45 cerebellum:8.85 brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:8.22 spine:8.41 retina:7.62 eye:7.36 artery/aorta:- vein:8.01 lymphnode:8.80 peripheral blood:- spleen:9.14 thymus:- bone marrow:9.74 adipose:8.32 bone:9.13 skin:8.03
CAGE cerebrum:3.08 cerebellum:- brain stem:2.50 corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:2.33 retina:- eye:- artery/aorta:2.64 vein:- lymphnode:3.78 peripheral blood:- spleen:2.81 thymus:3.70 bone marrow:- adipose:- bone:2.29 skin:3.03
RNA-seq cerebrum:1.55 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:- peripheral blood:- spleen:- thymus:- bone marrow:- adipose:- bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST uterus:43.60 placenta:13.80 prostate:- ovary:80.40 testis:14.80 heart:111.60 muscle:71 esophagus:- stomach:- intestine:- colon:-     liver/hepato:54.30        lung:30.10    bladder:66.20 kidney:16.10 pituitary:90.40 thyroid/parathyroid:- adrenal gland:- pancreas:46.90 breast:32.60 salivary:54
GeneChip uterus:8.09 placenta:7.51 prostate:8.16 ovary:8.75 testis:8.27 heart:8.46 muscle:8.83 esophagus:- stomach:7.98 intestine:8.18 colon:- liver/hepato:8.11 lung:8.41 bladder:8.22 kidney:8.37 pituitary:9.33 thyroid/parathyroid:- adrenal gland:8.45 pancreas:7.59 breast:8.40 salivary:7.84
CAGE uterus:2.47 placenta:1.88 prostate:2.76 ovary:2.69 testis:1.71 heart:- muscle:- esophagus:- stomach:1.07 intestine:2.19 colon:2.35     liver/hepato:1.89    lung:3.02 bladder:2.97 kidney:- pituitary:3.20 thyroid/parathyroid:- adrenal gland:2.70 pancreas:2.66 breast:2.49 salivary:-
RNA-seq uterus:- placenta:- prostate:- ovary:- testis:- heart:- muscle:2.64 esophagus:- stomach:- intestine:- colon:-     liver/hepato:2.13        lung:-    bladder:- kidney:- pituitary:- thyroid/parathyroid:- adrenal gland:- pancreas:- breast:- salivary:-

Gene Information

IDs

Refseq ID NM_144812
Gene ID 213988
Unigene ID Mm.131328
Probe set ID 1426545_at  [Mouse430_2]
Ensembl ID ENSMUSG00000047888

Orthologous Gene

Human[3]  NM_001024843, NM_001162501, NM_015088
Rat[1]  NM_138845, NM_001162501, NM_015088

Chromosomal Region

-

Gene Family (Interpro ID)

-

Link to Pubmed  (Pubmed ID)

8889548
10349636
10512203
11042159
11076861
11217851
12466851
12477932
12520002
12693553
12904583
14610273
14691545
15840001
16141072
16141073
17967808
18799693
19838187
21267068
22187428
23604909

Gene Ontology  (GO ID)

Biological Process

GO:0031047  gene silencing by RNA
GO:0060213  positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
GO:0006417  regulation of translation

Cellular Component

GO:0005575  cellular_component
GO:0005737  cytoplasm

Molecular Function

GO:0003674  molecular_function
GO:0000166  nucleotide binding
GO:0003723  RNA binding