histone deacetylase 11

 jump to detail

Synonym

HD11, histone deacetylase 11, Histone deacetylase 11, MGC27683, Hdac11

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST cerebrum:208.40 cerebellum:184.20 brain stem:222.50 corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:378.30 retina:64.30 eye:60.80 artery/aorta:84.40 vein:- lymphnode:- peripheral blood:28.80 spleen:- thymus:19.80 bone marrow:- adipose:- bone:12.50 skin:63.30
GeneChip cerebrum:10.43 cerebellum:9.56 brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:9.33 spine:10.94 retina:8.82 eye:8.43 artery/aorta:- vein:5.82 lymphnode:6.21 peripheral blood:- spleen:6.40 thymus:- bone marrow:5.34 adipose:7.24 bone:5.38 skin:6.57
CAGE cerebrum:4.07 cerebellum:- brain stem:4.68 corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:4.60 retina:- eye:- artery/aorta:1.20 vein:- lymphnode:1.47 peripheral blood:- spleen:1.36 thymus:1.17 bone marrow:- adipose:- bone:1.97 skin:2.17
RNA-seq cerebrum:40.93 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:- peripheral blood:- spleen:- thymus:- bone marrow:- adipose:- bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST uterus:87.20 placenta:- prostate:- ovary:11.50 testis:7.40 heart:18.60 muscle:- esophagus:- stomach:32.70 intestine:37 colon:17.60     liver/hepato:81.50        lung:70.30    bladder:66.20 kidney:- pituitary:90.40 thyroid/parathyroid:- adrenal gland:- pancreas:28.10 breast:49 salivary:162
GeneChip uterus:7.77 placenta:5.23 prostate:9.55 ovary:8.06 testis:9.30 heart:7.74 muscle:7.02 esophagus:- stomach:8.14 intestine:7.73 colon:- liver/hepato:9.14 lung:6.76 bladder:7.26 kidney:8.03 pituitary:9.83 thyroid/parathyroid:- adrenal gland:6.72 pancreas:9.18 breast:7.35 salivary:8.47
CAGE uterus:2.42 placenta:0.44 prostate:2.79 ovary:2.54 testis:3.98 heart:- muscle:- esophagus:- stomach:3.13 intestine:2.49 colon:2.74     liver/hepato:3.39    lung:2.33 bladder:2.68 kidney:- pituitary:3.98 thyroid/parathyroid:- adrenal gland:2.26 pancreas:3.80 breast:1.72 salivary:-
RNA-seq uterus:- placenta:- prostate:- ovary:- testis:- heart:- muscle:2.18 esophagus:- stomach:- intestine:- colon:-     liver/hepato:7.18        lung:-    bladder:- kidney:- pituitary:- thyroid/parathyroid:- adrenal gland:- pancreas:- breast:- salivary:-

Gene Information

IDs

Refseq ID NM_144919
Gene ID 232232
Unigene ID Mm.206218
Probe set ID 1451229_at  [Mouse430_2]
Ensembl ID ENSMUSG00000034245

Orthologous Gene

Human[2]  NM_001136041, NM_024827
Rat[1]  NM_001106610, NM_024827

Chromosomal Region

-

Gene Family (Interpro ID)

IPR000286  Histone deacetylase superfamily

Link to Pubmed  (Pubmed ID)

8889548
10349636
10922068
11042159
11076861
11217851
12466851
12477932
12711221
14581517
15475267
15489334
15782199
16141072
16141073
16602821
17568773
17893925
18824292
19011628
20059953
21677750
21731673
21985497
23657855
24047695
24726361
24747960

Gene Ontology  (GO ID)

Biological Process

GO:0016568  chromatin modification
GO:0016575  histone deacetylation
GO:0070932  histone H3 deacetylation
GO:0070933  histone H4 deacetylation
GO:0014003  oligodendrocyte development
GO:0006355  regulation of transcription, DNA-dependent
GO:0006351  transcription, DNA-dependent

Cellular Component

GO:0005737  cytoplasm
GO:0000118  histone deacetylase complex
GO:0005634  nucleus
GO:0005886  plasma membrane

Molecular Function

GO:0004407  histone deacetylase activity
GO:0031078  histone deacetylase activity (H3-K14 specific)
GO:0034739  histone deacetylase activity (H3-K16 specific)
GO:0032129  histone deacetylase activity (H3-K9 specific)
GO:0016787  hydrolase activity
GO:0032041  NAD-dependent histone deacetylase activity (H3-K14 specific)
GO:0046969  NAD-dependent histone deacetylase activity (H3-K9 specific)
GO:0046970  NAD-dependent histone deacetylase activity (H4-K16 specific)
GO:0005515  protein binding
GO:0008134  transcription factor binding