Bardet-Biedl syndrome 9 (human)

 jump to detail

Synonym

E130103I17Rik, Pthb1, Protein PTHB1, RIKEN cDNA E130103I17 gene

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST cerebrum:46.90 cerebellum:36.80 brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:19.10 spine:47.30 retina:160.70 eye:136.80 artery/aorta:- vein:- lymphnode:- peripheral blood:43.10 spleen:- thymus:39.50 bone marrow:- adipose:- bone:12.50 skin:39.60
GeneChip cerebrum:5.73 cerebellum:5.67 brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:6.14 spine:5.94 retina:6.85 eye:5.39 artery/aorta:- vein:5.50 lymphnode:6.25 peripheral blood:- spleen:6.01 thymus:- bone marrow:5.58 adipose:5.62 bone:5.66 skin:5.08
CAGE cerebrum:3.04 cerebellum:- brain stem:2.75 corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:2.65 retina:- eye:- artery/aorta:2.45 vein:- lymphnode:3.11 peripheral blood:- spleen:1.69 thymus:3.30 bone marrow:- adipose:- bone:2.19 skin:2.26
RNA-seq cerebrum:1.78 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:- peripheral blood:- spleen:- thymus:- bone marrow:- adipose:- bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST uterus:- placenta:- prostate:- ovary:46 testis:44.30 heart:- muscle:- esophagus:- stomach:- intestine:- colon:-     liver/hepato:9.10        lung:20.10    bladder:264.70 kidney:64.50 pituitary:116.30 thyroid/parathyroid:- adrenal gland:- pancreas:37.50 breast:19.60 salivary:-
GeneChip uterus:5.44 placenta:5.47 prostate:6.19 ovary:5.49 testis:7.75 heart:5.89 muscle:5.64 esophagus:- stomach:5.31 intestine:5.08 colon:- liver/hepato:5.31 lung:6.12 bladder:5.71 kidney:5.89 pituitary:6.06 thyroid/parathyroid:- adrenal gland:5.26 pancreas:5.59 breast:5.34 salivary:4.63
CAGE uterus:2.35 placenta:1.85 prostate:2.52 ovary:2.65 testis:4.61 heart:- muscle:- esophagus:- stomach:2.16 intestine:1.60 colon:1.58     liver/hepato:1.52    lung:3.12 bladder:2.58 kidney:- pituitary:3.73 thyroid/parathyroid:- adrenal gland:2.54 pancreas:2.75 breast:2.12 salivary:-
RNA-seq uterus:- placenta:- prostate:- ovary:- testis:- heart:- muscle:1.37 esophagus:- stomach:- intestine:- colon:-     liver/hepato:1.39        lung:-    bladder:- kidney:- pituitary:- thyroid/parathyroid:- adrenal gland:- pancreas:- breast:- salivary:-

Gene Information

IDs

Refseq ID NM_181316
Gene ID 319845
Unigene ID Mm.176725
Probe set ID 1427341_at  [Mouse430_2]
Ensembl ID ENSMUSG00000035919

Orthologous Gene

Human[12]  NM_001033604, NM_001033605, NM_014451, NM_198428
Rat[12]  NM_001033604, NM_001033605, NM_014451, NM_198428

Chromosomal Region

9A3  [22,280,159  -  22,692,724]

Gene Family (Interpro ID)

-

Link to Pubmed  (Pubmed ID)

10349636
10810084
11042159
11076861
11125038
11217851
12466851
12477932
12520002
14610273
15489334
15782199
16141072
16141073
17379567
18799693
21267068
21677750
22072986
22479622
22500027
22922713
23055939
24550735

Gene Ontology  (GO ID)

Biological Process

GO:0008150  biological_process

Cellular Component

GO:0034464  BBSome
GO:0042995  cell projection
GO:0005929  cilium
GO:0005737  cytoplasm
GO:0016020  membrane
GO:0005634  nucleus
GO:0005886  plasma membrane

Molecular Function

GO:0005515  protein binding