histone deacetylase 9

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Synonym

HD9, mKIAA0744, HD7B, histone deacetylase 9, Histone deacetylase-related protein, Hdac9, Hdrp, HDRP, Mitr, MEF2-interacting transcription repressor MITR, Hdac7b, AV022454, Histone deacetylase 9, D030072B18Rik

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST cerebrum:33 cerebellum:- brain stem:31.80 corpus callosum/glia:- pineal gland:- peripheral nerve:76.40 spine:- retina:64.30 eye:30.40 artery/aorta:84.40 vein:- lymphnode:32.40 peripheral blood:14.40 spleen:26.30 thymus:19.80 bone marrow:- adipose:- bone:- skin:-
GeneChip cerebrum:4.92 cerebellum:4.72 brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:4.70 spine:4.71 retina:4.42 eye:4.37 artery/aorta:- vein:4.44 lymphnode:5.03 peripheral blood:- spleen:4.87 thymus:- bone marrow:4.68 adipose:4.37 bone:4.54 skin:4.21
CAGE cerebrum:2.72 cerebellum:- brain stem:3.06 corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:2.68 retina:- eye:- artery/aorta:2.25 vein:- lymphnode:3.79 peripheral blood:- spleen:2.31 thymus:0.67 bone marrow:- adipose:- bone:2.09 skin:1.53
RNA-seq cerebrum:2.39 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:- peripheral blood:- spleen:- thymus:- bone marrow:- adipose:- bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST uterus:- placenta:- prostate:30.90 ovary:11.50 testis:29.60 heart:74.40 muscle:- esophagus:- stomach:- intestine:- colon:-     liver/hepato:-        lung:10    bladder:- kidney:- pituitary:51.70 thyroid/parathyroid:- adrenal gland:- pancreas:- breast:6.50 salivary:-
GeneChip uterus:4.28 placenta:4.32 prostate:4.89 ovary:4.34 testis:4.43 heart:5.02 muscle:4.66 esophagus:- stomach:4.43 intestine:4.31 colon:- liver/hepato:4.91 lung:4.22 bladder:4.37 kidney:4.42 pituitary:4.50 thyroid/parathyroid:- adrenal gland:4.04 pancreas:4.29 breast:4.36 salivary:4.56
CAGE uterus:1.58 placenta:0.44 prostate:0.63 ovary:1.51 testis:3.33 heart:- muscle:- esophagus:- stomach:1.91 intestine:0.42 colon:1.34     liver/hepato:0    lung:1.46 bladder:2.17 kidney:- pituitary:2.83 thyroid/parathyroid:- adrenal gland:0.78 pancreas:0.84 breast:0.83 salivary:-
RNA-seq uterus:- placenta:- prostate:- ovary:- testis:- heart:- muscle:1.45 esophagus:- stomach:- intestine:- colon:-     liver/hepato:1.54        lung:-    bladder:- kidney:- pituitary:- thyroid/parathyroid:- adrenal gland:- pancreas:- breast:- salivary:-

Gene Information

IDs

Refseq ID NM_024124
Gene ID 79221
Unigene ID Mm.310551
Probe set ID 1421306_a_at  [Mouse430_2]
Ensembl ID ENSMUSG00000004698

Orthologous Gene

Human[4]  NM_001204144, NM_001204145, NM_001204146, NM_001204147, NM_001204148, NM_014707, NM_058176, NM_178423, NM_178425
Rat [0]  

Chromosomal Region

-

Gene Family (Interpro ID)

IPR000286  Histone deacetylase superfamily

Link to Pubmed  (Pubmed ID)

10349636
10655483
11022042
11042159
11076861
11217851
11390982
12202037
12242305
12466851
12477932
12590135
12711221
15102471
15367668
15368895
15489334
15537544
15546868
15567413
15601857
15711539
15737621
16141072
16141073
16260608
16280321
16602821
16611996
16873063
17101791
17786239
17922010
17988634
18480421
18824292
18926829
19412888
19879272
19893013
20211142
20525066
20596014
20947501
21267068
21421818
21518438
21680747
21708950
21731673
21953612
21985497
22226696
22442009
22715468
23288173
23297420
24101673
24105743

Gene Ontology  (GO ID)

Biological Process

GO:0042113  B cell activation
GO:0030183  B cell differentiation
GO:0016568  chromatin modification
GO:0007507  heart development
GO:0070932  histone H3 deacetylation
GO:0070933  histone H4 deacetylation
GO:0006954  inflammatory response
GO:0045843  negative regulation of striated muscle tissue development
GO:0000122  negative regulation of transcription from RNA polymerase II promoter
GO:0045892  negative regulation of transcription, DNA-dependent
GO:0007399  nervous system development
GO:0048742  regulation of skeletal muscle fiber development
GO:0051153  regulation of striated muscle cell differentiation
GO:0006355  regulation of transcription, DNA-dependent
GO:0006351  transcription, DNA-dependent

Cellular Component

GO:0005737  cytoplasm
GO:0000118  histone deacetylase complex
GO:0035097  histone methyltransferase complex
GO:0005634  nucleus

Molecular Function

GO:0004407  histone deacetylase activity
GO:0031078  histone deacetylase activity (H3-K14 specific)
GO:0034739  histone deacetylase activity (H3-K16 specific)
GO:0032129  histone deacetylase activity (H3-K9 specific)
GO:0016787  hydrolase activity
GO:0032041  NAD-dependent histone deacetylase activity (H3-K14 specific)
GO:0046969  NAD-dependent histone deacetylase activity (H3-K9 specific)
GO:0046970  NAD-dependent histone deacetylase activity (H4-K16 specific)
GO:0005515  protein binding
GO:0003714  transcription corepressor activity
GO:0008134  transcription factor binding
GO:0070491  transcription repressor binding