heterogeneous nuclear ribonucleoprotein F

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Synonym

Hnrpf, MGC101981, heterogeneous nuclear ribonucleoprotein F, 4833420I20Rik, AA407306, MGC36971, hnRNP F, Heterogeneous nuclear ribonucleoprotein F

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST nodata
GeneChip cerebrum:9.63 cerebellum:10.06 brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:10.07 spine:9.35 retina:10.83 eye:11.14 artery/aorta:- vein:11.50 lymphnode:11.76 peripheral blood:- spleen:11.94 thymus:- bone marrow:11.80 adipose:10.84 bone:12.10 skin:11.96
CAGE cerebrum:4.30 cerebellum:- brain stem:4.15 corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:4.30 retina:- eye:- artery/aorta:5.09 vein:- lymphnode:6.00 peripheral blood:- spleen:5.87 thymus:6.10 bone marrow:- adipose:- bone:5.80 skin:5.08
RNA-seq cerebrum:11.99 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:- peripheral blood:- spleen:- thymus:- bone marrow:- adipose:- bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST nodata
GeneChip uterus:11.55 placenta:11.18 prostate:11.48 ovary:11.48 testis:10.13 heart:10.06 muscle:9.85 esophagus:- stomach:11.23 intestine:11.40 colon:- liver/hepato:10.55 lung:11.38 bladder:11.29 kidney:10.69 pituitary:10.60 thyroid/parathyroid:- adrenal gland:11.37 pancreas:11.25 breast:11.16 salivary:11.98
CAGE uterus:5.38 placenta:5.32 prostate:5.51 ovary:5.22 testis:6.92 heart:- muscle:- esophagus:- stomach:5.67 intestine:5.60 colon:5.58     liver/hepato:5.47    lung:5.53 bladder:5.21 kidney:- pituitary:4.68 thyroid/parathyroid:- adrenal gland:4.80 pancreas:4.93 breast:5.42 salivary:-
RNA-seq uterus:- placenta:- prostate:- ovary:- testis:- heart:- muscle:11.05 esophagus:- stomach:- intestine:- colon:-     liver/hepato:23.92        lung:-    bladder:- kidney:- pituitary:- thyroid/parathyroid:- adrenal gland:- pancreas:- breast:- salivary:-

Gene Information

IDs

Refseq ID NM_001166428
Gene ID 98758
Unigene ID -
Probe set ID 1456664_x_at  [Mouse430_2]
Ensembl ID ENSMUSG00000042079

Orthologous Gene

Human[12]  NM_001098204, NM_001098205, NM_001098206, NM_001098207, NM_001098208, NM_004966
Rat[12]  NM_001098204, NM_001098205, NM_001098206, NM_001098207, NM_001098208, NM_004966

Chromosomal Region

6F1  [117,850,358  -  117,875,639]

Gene Family (Interpro ID)

IPR000504  RNA recognition motif, RNP-1

Link to Pubmed  (Pubmed ID)

10349636
11042159
11076861
11217851
11544199
12466851
12477932
12520002
12819125
12904583
14610273
15489334
15782199
16033648
16141072
16141073
18799693
19164599
20975687
21565611
21625959
21677750
21739230
22128153
22664958
23284676
23649778
24457600

Gene Ontology  (GO ID)

Biological Process

GO:0006397  mRNA processing
GO:0043484  regulation of RNA splicing
GO:0008380  RNA splicing

Cellular Component

GO:0071013  catalytic step 2 spliceosome
GO:0005737  cytoplasm
GO:0005634  nucleus
GO:0030529  ribonucleoprotein complex
GO:0005681  spliceosomal complex

Molecular Function

GO:0003676  nucleic acid binding
GO:0000166  nucleotide binding
GO:0003723  RNA binding
GO:0003727  single-stranded RNA binding
GO:0017025  TATA-binding protein binding