tripartite motif-containing 28

Synonym

KRIP-1, RING finger protein 96, Transcription intermediary factor 1-beta, KRAB-interacting protein 1, KRAB-associated protein 1, FLJ29029, RNF96, TIF1B, tripartite motif-containing 28, TF1B, Tripartite motif-containing protein 28, KAP-1, TIF1-beta, Nuclear corepressor KAP-1, KAP1, TRIM28

normal 40 tissues
cell lines, primary cells, adult tissues and fetal tissues (FANTOM5 CAGE)

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain

blood

connective

EST

cerebrum:116.10

cerebellum:63

brain stem:-

corpus callosum/glia:145.80

pineal gland:296.70

peripheral nerve:92

spine:112.30

retina:118.60

eye:288

artery/aorta:89.90

vein:66.60

lymphnode:273

peripheral blood:72.90

spleen:226.90

thymus:257.70

bone marrow:98.40

adipose:-

bone:127.90

skin:211.20

GeneChip

cerebrum:7.38

cerebellum:7.68

brain stem:7.18

corpus callosum/glia:7.59

pineal gland:-

peripheral nerve:7.57

spine:7.47

retina:-

eye:-

artery/aorta:8.25

vein:7.29

lymphnode:8.47

peripheral blood:-

spleen:8.35

thymus:9.22

bone marrow:8.11

adipose:7.90

bone:-

skin:8.22

CAGE

cerebrum:3.54

cerebellum:-

brain stem:3.61

corpus callosum/glia:3.87

pineal gland:3.07

peripheral nerve:-

spine:3.44

retina:-

eye:-

artery/aorta:3.95

vein:4.17

lymphnode:4.08

peripheral blood:-

spleen:4.05

thymus:5.18

bone marrow:-

adipose:3.79

bone:-

skin:-

RNA-seq

cerebrum:4.11

cerebellum:-

brain stem:-

corpus callosum/glia:-

pineal gland:-

peripheral nerve:-

spine:-

retina:-

eye:-

artery/aorta:-

vein:-

lymphnode:5.59

peripheral blood:-

spleen:-

thymus:-

bone marrow:-

adipose:4.86

bone:-

skin:-

reproductive

muscular

alimentary

liver

lung

urinary

endo/exo-crine

EST

uterus:109.40

placenta:149.40

prostate:67.60

ovary:74.50

testis:155.80

heart:127.70

muscle:140.60

esophagus:-

stomach:254.90

intestine:129.60

colon:84.80

liver/hepato:10.60

lung:102.60

bladder:125.60

kidney:93.60

pituitary:116

thyroid/parathyroid:327.50

adrenal gland:50.80

pancreas:71.10

breast:325.30

salivary:-

GeneChip

uterus:8.42

placenta:8.28

prostate:8.35

ovary:8.33

testis:9.74

heart:7.40

muscle:7.02

esophagus:8.36

stomach:8.06

intestine:7.88

colon:8.31

liver/hepato:7.47

lung:8.04

bladder:-

kidney:7.95

pituitary:7.94

thyroid/parathyroid:8.45

adrenal gland:8

pancreas:7.61

breast:8.68

salivary:7.95

CAGE

uterus:4.36

placenta:4.32

prostate:4.26

ovary:4.56

testis:4.39

heart:3.70

muscle:3.97

esophagus:4.10

stomach:-

intestine:3.81

colon:4.19

liver/hepato:4.13

lung:4.03

bladder:4.11

kidney:3.56

pituitary:3.38

thyroid/parathyroid:4.43

adrenal gland:-

pancreas:4.20

breast:4.03

salivary:3.86

RNA-seq

uterus:-

placenta:-

prostate:5.77

ovary:6.20

testis:5.99

heart:3.84

muscle:5.94

esophagus:-

stomach:-

intestine:-

colon:5.51

liver/hepato:3.78

lung:5.06

bladder:-

kidney:4.82

pituitary:-

thyroid/parathyroid:5.41

adrenal gland:5.35

pancreas:-

breast:4.75

salivary:-

IDs

Refseq ID	NM_005762
Gene ID	10155
Unigene ID	Hs.467408
Probe set ID	200990_at [HG-U133_Plus_2]
Ensembl ID	ENSG00000130726
GTEx ID	ENSG00000130726

Orthologous Gene

Mouse[2]	NM_011588
Rat[1]	NM_053916

Chromosomal Region

19q13.43 [59,055,836 - 59,062,082]

Search genes near this gene
- Between -5kb and +5kb
- Between -10kb and +10kb

Gene Family (Interpro ID)

IPR000315	Zinc finger, B-box
IPR019787	Zinc finger, PHD-finger
IPR001965	Zinc finger, PHD-type

Gene Ontology (GO ID)

Biological Process

GO:0060028	convergent extension involved in axis elongation
GO:0006281	DNA repair
GO:0060669	embryonic placenta morphogenesis
GO:0001837	epithelial to mesenchymal transition
GO:0010467	gene expression
GO:0000122	negative regulation of transcription from RNA polymerase II promoter
GO:0045892	negative regulation of transcription, DNA-dependent
GO:0045739	positive regulation of DNA repair
GO:0045893	positive regulation of transcription, DNA-dependent
GO:0046777	protein amino acid autophosphorylation
GO:0051259	protein oligomerization
GO:0016925	protein sumoylation
GO:0016567	protein ubiquitination
GO:0006367	transcription initiation from RNA polymerase II promoter

Cellular Component

GO:0005719	nuclear euchromatin
GO:0005720	nuclear heterochromatin
GO:0005654	nucleoplasm
GO:0005634	nucleus

Molecular Function

GO:0070087	chromo shadow domain binding
GO:0003677	DNA binding
GO:0005515	protein binding
GO:0004672	protein kinase activity
GO:0043565	sequence-specific DNA binding
GO:0003713	transcription coactivator activity
GO:0003714	transcription corepressor activity
GO:0003700	transcription factor activity
GO:0031625	ubiquitin protein ligase binding
GO:0004842	ubiquitin-protein ligase activity
GO:0008270	zinc ion binding

tripartite motif-containing 28

Synonym

Expression Pattern

Choropleth map on BodyParts3D

Classification in 40 Organs

Gene Information

IDs

Orthologous Gene

Chromosomal Region

Gene Family (Interpro ID)

Link to Pubmed (Pubmed ID)

Gene Ontology (GO ID)

Biological Process

Cellular Component

Molecular Function