synaptotagmin binding, cytoplasmic RNA interacting protein

Synonym

SYNCRIP, dJ3J17.2, Glycine-and tyrosine-rich RNA-binding protein, NS1-associated protein 1, pp68, RP1-3J17.2, Heterogeneous nuclear ribonucleoprotein Q, HNRPQ1, hnRNP-Q, hnRNP Q, HNRPQ, GRY-RBP, NSAP1

normal 40 tissues
cell lines, primary cells, adult tissues and fetal tissues (FANTOM5 CAGE)

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain

blood

connective

EST

cerebrum:55.70

cerebellum:12.60

brain stem:-

corpus callosum/glia:-

pineal gland:148.30

peripheral nerve:61.30

spine:224.60

retina:237.30

eye:99.90

artery/aorta:30

vein:-

lymphnode:212.30

peripheral blood:54.70

spleen:37.80

thymus:77.30

bone marrow:39.40

adipose:80.70

bone:89.60

skin:110.40

GeneChip

cerebrum:7.94

cerebellum:7.98

brain stem:7.86

corpus callosum/glia:8.36

pineal gland:-

peripheral nerve:8.41

spine:8.12

retina:-

eye:-

artery/aorta:8.09

vein:8.88

lymphnode:8.75

peripheral blood:-

spleen:8.92

thymus:9.27

bone marrow:8.36

adipose:8.39

bone:-

skin:8.18

CAGE

cerebrum:3.79

cerebellum:-

brain stem:3.93

corpus callosum/glia:3.73

pineal gland:3.96

peripheral nerve:-

spine:4.02

retina:-

eye:-

artery/aorta:4.07

vein:3.98

lymphnode:4.04

peripheral blood:-

spleen:3.89

thymus:4.22

bone marrow:-

adipose:3.85

bone:-

skin:-

RNA-seq

cerebrum:2.59

cerebellum:-

brain stem:-

corpus callosum/glia:-

pineal gland:-

peripheral nerve:-

spine:-

retina:-

eye:-

artery/aorta:-

vein:-

lymphnode:2.57

peripheral blood:-

spleen:-

thymus:-

bone marrow:-

adipose:3.11

bone:-

skin:-

reproductive

muscular

alimentary

liver

lung

urinary

endo/exo-crine

EST

uterus:200.50

placenta:112.90

prostate:123.90

ovary:37.30

testis:47.60

heart:63.90

muscle:20.10

esophagus:-

stomach:-

intestine:32.40

colon:50.90

liver/hepato:84.40

lung:102.60

bladder:125.60

kidney:104

pituitary:116

thyroid/parathyroid:163.70

adrenal gland:-

pancreas:80

breast:241.60

salivary:-

GeneChip

uterus:8.81

placenta:8.48

prostate:8.63

ovary:8.86

testis:8.22

heart:8.39

muscle:8.38

esophagus:9.06

stomach:8.97

intestine:8.41

colon:8.37

liver/hepato:8.41

lung:8.90

bladder:-

kidney:8.23

pituitary:7.46

thyroid/parathyroid:9.27

adrenal gland:8.57

pancreas:8.39

breast:8.73

salivary:8.26

CAGE

uterus:4.19

placenta:4.12

prostate:3.86

ovary:3.70

testis:3.76

heart:4.07

muscle:4.18

esophagus:4.01

stomach:-

intestine:3.69

colon:3.74

liver/hepato:3.94

lung:3.72

bladder:4.08

kidney:3.87

pituitary:3.78

thyroid/parathyroid:3.99

adrenal gland:-

pancreas:4.06

breast:3.22

salivary:4.03

RNA-seq

uterus:-

placenta:-

prostate:2.18

ovary:2.83

testis:2.95

heart:2.58

muscle:2.87

esophagus:-

stomach:-

intestine:-

colon:2.77

liver/hepato:2.16

lung:2.31

bladder:-

kidney:2.64

pituitary:-

thyroid/parathyroid:4.02

adrenal gland:3.27

pancreas:-

breast:3.07

salivary:-

IDs

Refseq ID	NM_006372
Gene ID	10492
Unigene ID	Hs.571177
Probe set ID	209024_s_at [HG-U133_Plus_2]
Ensembl ID	ENSG00000135316
GTEx ID	ENSG00000135316

Orthologous Gene

Mouse[6]	NM_019666, NM_019796
Rat[1]	NM_001047916, NM_019796

Chromosomal Region

6q14.3 [86,267,696 - 86,353,510]

Search genes near this gene
- Between -5kb and +5kb
- Between -10kb and +10kb

Gene Family (Interpro ID)

IPR000504

RNA recognition motif, RNP-1

GO:0071346	cellular response to interferon-gamma
GO:0070934	CRD-mediated mRNA stabilization
GO:0017148	negative regulation of translation
GO:0000398	nuclear mRNA splicing, via spliceosome
GO:0006396	RNA processing
GO:0008380	RNA splicing
GO:0019048	virus-host interaction

GO:0071013	catalytic step 2 spliceosome
GO:0070937	CRD-mediated mRNA stability complex
GO:0005783	endoplasmic reticulum
GO:0071204	histone pre-mRNA 3'end processing complex
GO:0005654	nucleoplasm
GO:0005634	nucleus
GO:0030529	ribonucleoprotein complex

GO:0000166	nucleotide binding
GO:0008143	poly(A) RNA binding
GO:0005515	protein binding
GO:0003723	RNA binding

synaptotagmin binding, cytoplasmic RNA interacting protein

Synonym

Expression Pattern

Choropleth map on BodyParts3D

Classification in 40 Organs

Gene Information

IDs

Orthologous Gene

Chromosomal Region

Gene Family (Interpro ID)

Link to Pubmed (Pubmed ID)

Gene Ontology (GO ID)

Biological Process

Cellular Component

Molecular Function