splicing factor, arginine/serine-rich 13A

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Synonym

Splicing factor SRp38, SRp38, 40 kDa SR-repressor protein, FUS interacting protein (serine/arginine-rich) 1, FUSIP1, SRrp40, TASR, NSSR, FUSIP2, FUS-interacting protein (serine-arginine rich) 2, TASR2, TLS-associated protein with SR repeats, TLS-associated serine-arginine protein, TASR1, TLS-associated protein with Ser-Arg repeats, TLS-associated SR protein, FUS-interacting serine-arginine-rich protein 1

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST nodata
GeneChip cerebrum:7.26 cerebellum:7.70 brain stem:7.26 corpus callosum/glia:7.51 pineal gland:- peripheral nerve:7.14 spine:7.41 retina:- eye:- artery/aorta:7.12 vein:7.14 lymphnode:7.86 peripheral blood:- spleen:7.76 thymus:9.47 bone marrow:7.73 adipose:7.26 bone:- skin:7.59
CAGE nodata
RNA-seq cerebrum:2.11 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:2.58 peripheral blood:- spleen:- thymus:- bone marrow:- adipose:2.20 bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST nodata
GeneChip uterus:8.27 placenta:7.99 prostate:7.98 ovary:8.42 testis:7.96 heart:7.32 muscle:6.90 esophagus:7.50 stomach:7.62 intestine:7.67 colon:7.32 liver/hepato:6.80 lung:7.70 bladder:- kidney:7.05 pituitary:7.39 thyroid/parathyroid:7.71 adrenal gland:7.29 pancreas:6.93 breast:7.55 salivary:7.14
CAGE nodata
RNA-seq uterus:- placenta:- prostate:3.02 ovary:3.11 testis:2.69 heart:1.10 muscle:2.08 esophagus:- stomach:- intestine:- colon:1.05     liver/hepato:2.02        lung:1.19    bladder:- kidney:2.66 pituitary:- thyroid/parathyroid:3.05 adrenal gland:2.86 pancreas:- breast:2.25 salivary:-

Gene Information

IDs

Refseq ID NM_054016
Gene ID 10772
Unigene ID -
Probe set ID 213594_x_at  [HG-U133_Plus_2]
Ensembl ID ENSG00000188529
ENSG00000215699
GTEx ID ENSG00000188529
ENSG00000215699

Orthologous Gene

Mouse[10]  NM_001080387, NM_010178
Rat[1]  NM_001025738, NM_010178

Chromosomal Region

GL000191.1  [36,277  -  50,281]
1p36.11  [24,291,294  -  24,307,417]

Gene Family (Interpro ID)

IPR000504  RNA recognition motif, RNP-1

Link to Pubmed  (Pubmed ID)

8125298
8619474
9110174
9774382
10583508
10779324
11684676
11790298
11891055
12419250
12477932
14559993
14702039
14765198
15302935
15324660
15489334
15778465
16135820
17081983
17207965
17353931
17361132
17936706
20232416
20516191
21135127
21139048
21145461
21984158
22113938
22365833
22939629
22990118
23084401
23125841
23166591
23251661
24163370
24250222
24457600
24550385

Gene Ontology  (GO ID)

Biological Process

GO:0000244  assembly of spliceosomal tri-snRNP
GO:0016482  cytoplasmic transport
GO:0006406  mRNA export from nucleus
GO:0006376  mRNA splice site selection
GO:0048025  negative regulation of nuclear mRNA splicing, via spliceosome
GO:0000398  nuclear mRNA splicing, via spliceosome
GO:0006355  regulation of transcription, DNA-dependent
GO:0000375  RNA splicing, via transesterification reactions

Cellular Component

GO:0005737  cytoplasm
GO:0016607  nuclear speck
GO:0005654  nucleoplasm
GO:0005634  nucleus

Molecular Function

GO:0000166  nucleotide binding
GO:0005515  protein binding
GO:0003723  RNA binding
GO:0050733  RS domain binding
GO:0051082  unfolded protein binding