collagen, type II, alpha 1

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Synonym

SEDC, Collagen alpha-1(II) chain precursor, COL2A1, COL11A3, AOM, MGC131516

normal 40 tissues
cell lines, primary cells, adult tissues and fetal tissues (FANTOM5 CAGE)

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain

blood

connective

EST

cerebrum:5.90

cerebellum:-

brain stem:-

corpus callosum/glia:-

pineal gland:-

peripheral nerve:2729.80

spine:-

retina:-

eye:29.40

artery/aorta:-

vein:-

lymphnode:-

peripheral blood:-

spleen:-

thymus:-

bone marrow:-

adipose:-

bone:1561

skin:14.40

GeneChip

cerebrum:3.28

cerebellum:3.38

brain stem:3.19

corpus callosum/glia:3.28

pineal gland:-

peripheral nerve:3.39

spine:3.48

retina:-

eye:-

artery/aorta:3.39

vein:3.42

lymphnode:3.16

peripheral blood:-

spleen:3.18

thymus:3.12

bone marrow:3.75

adipose:3.28

bone:-

skin:3.46

CAGE

cerebrum:0.02

cerebellum:-

brain stem:0.12

corpus callosum/glia:0.07

pineal gland:0

peripheral nerve:-

spine:0.09

retina:-

eye:-

artery/aorta:3.04

vein:0

lymphnode:0

peripheral blood:-

spleen:0

thymus:0.12

bone marrow:-

adipose:0

bone:-

skin:-

RNA-seq

cerebrum:0.01

cerebellum:-

brain stem:-

corpus callosum/glia:-

pineal gland:-

peripheral nerve:-

spine:-

retina:-

eye:-

artery/aorta:-

vein:-

lymphnode:0.00

peripheral blood:-

spleen:-

thymus:-

bone marrow:-

adipose:0

bone:-

skin:-

reproductive

muscular

alimentary

liver

lung

urinary

endo/exo-crine

EST

uterus:-

placenta:25.50

prostate:-

ovary:37.30

testis:21.60

heart:25.50

muscle:-

esophagus:-

stomach:-

intestine:-

colon:-

liver/hepato:-

lung:19.60

bladder:-

kidney:-

pituitary:-

thyroid/parathyroid:-

adrenal gland:-

pancreas:-

breast:92.90

salivary:-

GeneChip

uterus:3.29

placenta:3.59

prostate:3.21

ovary:3.19

testis:3.70

heart:3.25

muscle:3.61

esophagus:3.22

stomach:3.85

intestine:3.34

colon:3.26

liver/hepato:3.30

lung:3.06

bladder:-

kidney:3.12

pituitary:4.71

thyroid/parathyroid:3.10

adrenal gland:3.28

pancreas:3.29

breast:3.62

salivary:3.14

CAGE

uterus:0

placenta:0.08

prostate:0.44

ovary:0.07

testis:0.12

heart:0

muscle:0

esophagus:0

stomach:-

intestine:0

colon:0.39

liver/hepato:0

lung:0.17

bladder:0

kidney:0

pituitary:0.95

thyroid/parathyroid:0

adrenal gland:-

pancreas:0

breast:0

salivary:0

RNA-seq

uterus:-

placenta:-

prostate:0.14

ovary:0.30

testis:0.17

heart:0

muscle:0.01

esophagus:-

stomach:-

intestine:-

colon:0.01

liver/hepato:0

lung:0.31

bladder:-

kidney:0

pituitary:-

thyroid/parathyroid:0.00

adrenal gland:0.01

pancreas:-

breast:0.24

salivary:-

IDs

Refseq ID	NM_033150
Gene ID	1280
Unigene ID	Hs.408182
Probe set ID	213492_at [HG-U133_Plus_2]
Ensembl ID	ENSG00000139219
GTEx ID	ENSG00000139219

Orthologous Gene

Mouse[2]	NM_001113515, NM_031163
Rat [0]

Chromosomal Region

12q13.11 [48,366,748 - 48,398,269]

Search genes near this gene
- Between -5kb and +5kb
- Between -10kb and +10kb

Gene Family (Interpro ID)

Gene Ontology (GO ID)

Biological Process

GO:0007411	axon guidance
GO:0001502	cartilage condensation
GO:0051216	cartilage development
GO:0060351	cartilage development involved in endochondral bone morphogenesis
GO:0007417	central nervous system development
GO:0002062	chondrocyte differentiation
GO:0030574	collagen catabolic process
GO:0030199	collagen fibril organization
GO:0060272	embryonic skeletal joint morphogenesis
GO:0001958	endochondral ossification
GO:0022617	extracellular matrix disassembly
GO:0030198	extracellular matrix organization
GO:0003007	heart morphogenesis
GO:0042472	inner ear morphogenesis
GO:0060174	limb bud formation
GO:0043066	negative regulation of apoptosis
GO:0030903	notochord development
GO:0060021	palate development
GO:0006029	proteoglycan metabolic process
GO:0010468	regulation of gene expression
GO:0007605	sensory perception of sound
GO:0001501	skeletal system development
GO:0001894	tissue homeostasis
GO:0007601	visual perception

Cellular Component

GO:0005604	basement membrane
GO:0005585	collagen type II
GO:0005788	endoplasmic reticulum lumen
GO:0005576	extracellular region
GO:0005615	extracellular space

Molecular Function

GO:0030020	extracellular matrix structural constituent conferring tensile strength
GO:0042802	identical protein binding
GO:0046872	metal ion binding
GO:0048407	platelet-derived growth factor binding

collagen, type II, alpha 1

Synonym

Expression Pattern

Choropleth map on BodyParts3D

Classification in 40 Organs

Gene Information

IDs

Orthologous Gene

Chromosomal Region

Gene Family (Interpro ID)

Link to Pubmed (Pubmed ID)

Gene Ontology (GO ID)

Biological Process

Cellular Component

Molecular Function