collagen, type VI, alpha 3

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Synonym

DKFZp686D23123, collagen, type VI, alpha 3, FLJ34702, DKFZp686K04147, Collagen alpha-3(VI) chain precursor, COL6A3

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST cerebrum:13 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:276 spine:- retina:- eye:70.50 artery/aorta:60 vein:- lymphnode:- peripheral blood:- spleen:18.90 thymus:38.70 bone marrow:275.50 adipose:484 bone:716.50 skin:144
GeneChip cerebrum:4.42 cerebellum:4.29 brain stem:4.57 corpus callosum/glia:4.53 pineal gland:- peripheral nerve:8.13 spine:5.89 retina:- eye:- artery/aorta:9.35 vein:10.35 lymphnode:8.53 peripheral blood:- spleen:8.87 thymus:8.22 bone marrow:5.85 adipose:10.42 bone:- skin:9.78
CAGE cerebrum:0.68 cerebellum:- brain stem:1.43 corpus callosum/glia:1.82 pineal gland:3.01 peripheral nerve:- spine:1.71 retina:- eye:- artery/aorta:4.53 vein:4.68 lymphnode:4.44 peripheral blood:- spleen:4.50 thymus:3.04 bone marrow:- adipose:6.25 bone:- skin:-
RNA-seq cerebrum:0.01 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:0.77 peripheral blood:- spleen:- thymus:- bone marrow:- adipose:1.43 bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST uterus:637.90 placenta:225.90 prostate:90.10 ovary:111.80 testis:30.30 heart:204.30 muscle:80.40 esophagus:342.80 stomach:148.70 intestine:162 colon:271.30     liver/hepato:52.80        lung:127.10    bladder:376.80 kidney:10.40 pituitary:- thyroid/parathyroid:- adrenal gland:- pancreas:97.80 breast:316 salivary:-
GeneChip uterus:11.17 placenta:9.48 prostate:9.10 ovary:10.35 testis:7.63 heart:9.41 muscle:8.54 esophagus:8.63 stomach:9.67 intestine:10.12 colon:9.82 liver/hepato:6.79 lung:9.76 bladder:- kidney:6.40 pituitary:5.62 thyroid/parathyroid:8.55 adrenal gland:7.69 pancreas:8.12 breast:10.53 salivary:7.16
CAGE uterus:6.43 placenta:5.18 prostate:5.60 ovary:5.78 testis:4.61 heart:5.17 muscle:4.68 esophagus:5.14 stomach:- intestine:4.52 colon:5.07     liver/hepato:2.74    lung:4.78 bladder:5.98 kidney:3.59 pituitary:1.42 thyroid/parathyroid:4.50 adrenal gland:- pancreas:4.15 breast:5.58 salivary:3.61
RNA-seq uterus:- placenta:- prostate:0.00 ovary:2.67 testis:0.84 heart:0.66 muscle:0.03 esophagus:- stomach:- intestine:- colon:0.23     liver/hepato:0.37        lung:0.31    bladder:- kidney:0.80 pituitary:- thyroid/parathyroid:0.64 adrenal gland:0.28 pancreas:- breast:0.41 salivary:-

Gene Information

IDs

Refseq ID NM_057167
Gene ID 1293
Unigene ID Hs.233240
Probe set ID 201438_at  [HG-U133_Plus_2]
Ensembl ID ENSG00000163359
GTEx ID ENSG00000163359

Orthologous Gene

Mouse [0]  
Rat [0]  

Chromosomal Region

2q37.3  [238,232,646  -  238,323,018]

Gene Family (Interpro ID)

IPR003961  Fibronectin, type III
IPR008957  Fibronectin, type III-like fold

Link to Pubmed  (Pubmed ID)

1339440
1689238
3198591
3348212
3665927
7533217
8387021
8782832
8805527
8862926
8889548
9265624
9516440
9536084
11785962
11992252
12011280
12077460
12477932
14702039
15146197
15563506
15965965
16141002
16335952
16613849
17918257
18366090
18400749
19056867
19401702
19834535
19837927
19851296
20198315
20301468
20301676
20379614
21782286
23818951
24443028

Gene Ontology  (GO ID)

Biological Process

GO:0007411  axon guidance
GO:0007155  cell adhesion
GO:0030574  collagen catabolic process
GO:0022617  extracellular matrix disassembly
GO:0030198  extracellular matrix organization
GO:0007517  muscle organ development

Cellular Component

GO:0005589  collagen type VI
GO:0005788  endoplasmic reticulum lumen
GO:0031012  extracellular matrix
GO:0005576  extracellular region
GO:0005615  extracellular space
GO:0042383  sarcolemma

Molecular Function

GO:0004867  serine-type endopeptidase inhibitor activity