collagen, type IX, alpha 3

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Synonym

collagen, type IX, alpha 3, COL9A3, DJ885L7.4.1, Collagen alpha-3(IX) chain precursor, IDD, EDM3

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST nodata
GeneChip cerebrum:7.16 cerebellum:5.37 brain stem:7.42 corpus callosum/glia:8.35 pineal gland:- peripheral nerve:7.34 spine:7.80 retina:- eye:- artery/aorta:5.28 vein:5.08 lymphnode:4.92 peripheral blood:- spleen:4.49 thymus:3.70 bone marrow:5.15 adipose:5.08 bone:- skin:5.26
CAGE cerebrum:2.59 cerebellum:- brain stem:3.34 corpus callosum/glia:4.02 pineal gland:0.79 peripheral nerve:- spine:2.97 retina:- eye:- artery/aorta:1.97 vein:2.06 lymphnode:1.04 peripheral blood:- spleen:0.95 thymus:0.12 bone marrow:- adipose:0.36 bone:- skin:-
RNA-seq cerebrum:2.55 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:0.77 peripheral blood:- spleen:- thymus:- bone marrow:- adipose:0.28 bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST nodata
GeneChip uterus:4.50 placenta:4.31 prostate:4.47 ovary:4.83 testis:6.46 heart:4.90 muscle:4.36 esophagus:5.05 stomach:4.88 intestine:5.16 colon:5.41 liver/hepato:4.87 lung:4.67 bladder:- kidney:4.79 pituitary:5.61 thyroid/parathyroid:9.25 adrenal gland:4.62 pancreas:4.69 breast:5.14 salivary:7.10
CAGE uterus:0.96 placenta:0.30 prostate:0.70 ovary:0.68 testis:0.84 heart:0.81 muscle:0.24 esophagus:1.23 stomach:- intestine:1.07 colon:1.17     liver/hepato:0.63    lung:0.59 bladder:0.83 kidney:0.54 pituitary:2.27 thyroid/parathyroid:1.50 adrenal gland:- pancreas:0.58 breast:0 salivary:2.93
RNA-seq uterus:- placenta:- prostate:0.48 ovary:0.69 testis:1.74 heart:0.21 muscle:0.16 esophagus:- stomach:- intestine:- colon:1.05     liver/hepato:0.26        lung:0.69    bladder:- kidney:0.29 pituitary:- thyroid/parathyroid:1.59 adrenal gland:0.96 pancreas:- breast:0.60 salivary:-

Gene Information

IDs

Refseq ID NM_001853
Gene ID 1299
Unigene ID -
Probe set ID 204724_s_at  [HG-U133_Plus_2]
Ensembl ID ENSG00000092758
GTEx ID ENSG00000092758

Orthologous Gene

Mouse[2]  NM_009936
Rat[2]  NM_009936

Chromosomal Region

20q13.33  [61,447,596  -  61,472,511]

Gene Family (Interpro ID)

-

Link to Pubmed  (Pubmed ID)

1429648
2446864
3473493
3542919
8586434
8660302
9164858
10090888
10428822
10655510
10678658
11308397
11565064
11724554
11780052
12096843
12461395
12477932
12601188
12782139
15167667
15489334
15523498
15917166
15922184
16133074
16586133
17471097
17701042
18469698
19180518
20029029
20301302
20358595
21042783
21311409
23132862
24636772

Gene Ontology  (GO ID)

Biological Process

GO:0007411  axon guidance
GO:0030574  collagen catabolic process
GO:0022617  extracellular matrix disassembly
GO:0030198  extracellular matrix organization
GO:0008585  female gonad development
GO:0008584  male gonad development

Cellular Component

GO:0005594  collagen type IX
GO:0005788  endoplasmic reticulum lumen
GO:0005576  extracellular region

Molecular Function

GO:0030020  extracellular matrix structural constituent conferring tensile strength