vacuolar protein sorting 13 homolog A (S. cerevisiae)

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Synonym

Chorein, Vacuolar protein sorting-associated protein 13A, KIAA0986, vacuolar protein sorting 13A (yeast), chorea acanthocytosis, CHAC, Chorea-acanthocytosis protein, VPS13A, FLJ42030

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST cerebrum:33.20 cerebellum:63 brain stem:- corpus callosum/glia:58.30 pineal gland:148.30 peripheral nerve:92 spine:112.30 retina:- eye:29.40 artery/aorta:30 vein:66.60 lymphnode:80.90 peripheral blood:- spleen:56.70 thymus:51.50 bone marrow:78.70 adipose:121 bone:12.80 skin:24
GeneChip cerebrum:5.41 cerebellum:5.91 brain stem:4.92 corpus callosum/glia:4.78 pineal gland:- peripheral nerve:5.64 spine:4.95 retina:- eye:- artery/aorta:5.82 vein:5.71 lymphnode:5.38 peripheral blood:- spleen:5.94 thymus:5.93 bone marrow:5.29 adipose:5.34 bone:- skin:5.40
CAGE cerebrum:3.77 cerebellum:- brain stem:3.40 corpus callosum/glia:2.62 pineal gland:4.05 peripheral nerve:- spine:3.42 retina:- eye:- artery/aorta:3.73 vein:3.26 lymphnode:3.34 peripheral blood:- spleen:3.43 thymus:3.96 bone marrow:- adipose:3.55 bone:- skin:-
RNA-seq cerebrum:0.17 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:0.79 peripheral blood:- spleen:- thymus:- bone marrow:- adipose:1.38 bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST uterus:9.10 placenta:18.20 prostate:78.90 ovary:74.50 testis:86.50 heart:- muscle:60.30 esophagus:- stomach:148.70 intestine:32.40 colon:59.40     liver/hepato:42.20        lung:44    bladder:- kidney:156 pituitary:- thyroid/parathyroid:- adrenal gland:- pancreas:106.70 breast:92.90 salivary:-
GeneChip uterus:5.48 placenta:4.76 prostate:5.33 ovary:5.15 testis:4.86 heart:5.88 muscle:6.85 esophagus:5.23 stomach:5.24 intestine:5.57 colon:4.66 liver/hepato:5.51 lung:5.40 bladder:- kidney:5.84 pituitary:5.78 thyroid/parathyroid:5.58 adrenal gland:5.97 pancreas:4.67 breast:5.41 salivary:4.89
CAGE uterus:3.68 placenta:2.74 prostate:3.55 ovary:3.24 testis:4.02 heart:3.87 muscle:4.30 esophagus:3.63 stomach:- intestine:4.37 colon:4.00     liver/hepato:3.18    lung:3.78 bladder:3.54 kidney:3.75 pituitary:4.34 thyroid/parathyroid:3.40 adrenal gland:- pancreas:3.20 breast:3.27 salivary:3.53
RNA-seq uterus:- placenta:- prostate:0.84 ovary:1.36 testis:0.82 heart:2.24 muscle:0.00 esophagus:- stomach:- intestine:- colon:1.02     liver/hepato:0.00        lung:0.28    bladder:- kidney:0.94 pituitary:- thyroid/parathyroid:0.00 adrenal gland:0.43 pancreas:- breast:0.02 salivary:-

Gene Information

IDs

Refseq ID NM_033305
Gene ID 23230
Unigene ID Hs.459790
Probe set ID 213686_at  [HG-U133_Plus_2]
Ensembl ID ENSG00000197969
GTEx ID ENSG00000197969

Orthologous Gene

Mouse[1]  NM_173028
Rat[1]  NM_001100975

Chromosomal Region

9q21.2  [79,792,269  -  80,036,457]

Gene Family (Interpro ID)

-

Link to Pubmed  (Pubmed ID)

9382101
10231032
10737800
11381253
11381254
12477932
12671946
14702039
15146197
15164053
15489334
15498460
15918062
17474147
17673232
17998451
20301334
20301561
20379614
20972266
21139048
21598378
21733561
21890473
21906983
21963094
21987550
21987572
22038564
22227296
22366033
23568775
23746940
24129186
24250222

Gene Ontology  (GO ID)

Biological Process

GO:0008219  cell death
GO:0006895  Golgi to endosome transport
GO:0007626  locomotory behavior
GO:0007399  nervous system development
GO:0008104  protein localization
GO:0015031  protein transport
GO:0035176  social behavior

Cellular Component

GO:0031045  dense core granule
GO:0005622  intracellular

Molecular Function

GO:0005515  protein binding