RNA binding motif protein 9

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Synonym

Hexaribonucleotide-binding protein 2, HRNBP2, RNA-binding motif protein 9, RNA-binding protein 9, RBM9, RTA, Repressor of tamoxifen transcriptional activity, RNA binding motif protein 9

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST cerebrum:317.60 cerebellum:377.80 brain stem:- corpus callosum/glia:145.80 pineal gland:148.30 peripheral nerve:398.70 spine:336.90 retina:474.60 eye:293.80 artery/aorta:719.40 vein:866.40 lymphnode:556.10 peripheral blood:364.40 spleen:170.20 thymus:38.70 bone marrow:846.30 adipose:40.30 bone:230.30 skin:326.40
GeneChip cerebrum:7.79 cerebellum:8.56 brain stem:7.88 corpus callosum/glia:6.20 pineal gland:- peripheral nerve:8.27 spine:6.52 retina:- eye:- artery/aorta:8.29 vein:7.51 lymphnode:6.75 peripheral blood:- spleen:6.80 thymus:5.81 bone marrow:4.85 adipose:7.54 bone:- skin:7.19
CAGE cerebrum:4.47 cerebellum:- brain stem:3.58 corpus callosum/glia:3.26 pineal gland:3.48 peripheral nerve:- spine:3.47 retina:- eye:- artery/aorta:4.08 vein:2.57 lymphnode:2.78 peripheral blood:- spleen:2.89 thymus:1.99 bone marrow:- adipose:3.37 bone:- skin:-
RNA-seq cerebrum:2.73 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:0.01 peripheral blood:- spleen:- thymus:- bone marrow:- adipose:2.34 bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST uterus:173.20 placenta:247.70 prostate:608.30 ovary:409.90 testis:129.80 heart:779.10 muscle:1285.80 esophagus:- stomach:85 intestine:550.80 colon:322.20     liver/hepato:105.60        lung:249.30    bladder:- kidney:93.60 pituitary:695.90 thyroid/parathyroid:655 adrenal gland:304.70 pancreas:186.70 breast:158 salivary:656.80
GeneChip uterus:8.57 placenta:6.37 prostate:8.17 ovary:8.05 testis:7.50 heart:7.60 muscle:8.37 esophagus:8.09 stomach:7.73 intestine:6.81 colon:6.97 liver/hepato:7.64 lung:7.20 bladder:- kidney:6.85 pituitary:8.01 thyroid/parathyroid:7.96 adrenal gland:7.86 pancreas:6.11 breast:8.01 salivary:6.95
CAGE uterus:4.34 placenta:3.49 prostate:3.91 ovary:3.95 testis:3.38 heart:3.44 muscle:2.91 esophagus:3.66 stomach:- intestine:3.42 colon:3.78     liver/hepato:3.20    lung:3.53 bladder:3.82 kidney:3.12 pituitary:3.97 thyroid/parathyroid:3.81 adrenal gland:- pancreas:3.10 breast:3.38 salivary:3.24
RNA-seq uterus:- placenta:- prostate:1.89 ovary:3.15 testis:1.98 heart:1.81 muscle:2.09 esophagus:- stomach:- intestine:- colon:2.94     liver/hepato:1.85        lung:0.82    bladder:- kidney:1.48 pituitary:- thyroid/parathyroid:0.37 adrenal gland:1.35 pancreas:- breast:1.72 salivary:-

Gene Information

IDs

Refseq ID NM_001082579
Gene ID 23543
Unigene ID Hs.282998
Probe set ID 212104_s_at  [HG-U133_Plus_2]
Ensembl ID ENSG00000100320
GTEx ID ENSG00000100320

Orthologous Gene

Mouse[24]  NM_001110827, NM_001110828, NM_001110829, NM_001110830, NM_053104, NM_175387
Rat[1]  NM_001079895, NM_001110828, NM_001110829, NM_001110830, NM_053104, NM_175387

Chromosomal Region

22q12.3  [36,134,783  -  36,424,473]

Gene Family (Interpro ID)

IPR000504  RNA recognition motif, RNP-1

Link to Pubmed  (Pubmed ID)

10591208
11401487
11875103
12477932
12529303
14702039
15461802
15489334
16189514
16260614
16344560
16537540
16713569
17289029
17715393
18029348
18573872
18573884
18794351
19060904
19136955
19322201
20131247
20211142
20936779
21139048
21145461
21747913
21876675
21890473
21988832
22083953
22365833
22666429
23143756
23149937
23275563
23383273
24048253
24332808
24457600

Gene Ontology  (GO ID)

Biological Process

GO:0048813  dendrite morphogenesis
GO:0030520  estrogen receptor signaling pathway
GO:0006397  mRNA processing
GO:0045892  negative regulation of transcription, DNA-dependent
GO:0050885  neuromuscular process controlling balance
GO:0021942  radial glia guided migration of Purkinje cell
GO:0000381  regulation of alternative nuclear mRNA splicing, via spliceosome
GO:0042127  regulation of cell proliferation
GO:0010724  regulation of definitive erythrocyte differentiation
GO:0016070  RNA metabolic process
GO:0008380  RNA splicing

Cellular Component

GO:0005737  cytoplasm
GO:0005730  nucleolus
GO:0005634  nucleus

Molecular Function

GO:0003729  mRNA binding
GO:0000166  nucleotide binding
GO:0005515  protein binding
GO:0003723  RNA binding
GO:0003714  transcription corepressor activity
GO:0008134  transcription factor binding