gastrulation brain homeobox 1

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Synonym

gastrulation brain homeobox 1, Homeobox protein GBX-1, gastrulation brain homeo box 1, Gastrulation and brain-specific homeobox protein 1, GBX1

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST cerebrum:- cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:- peripheral blood:- spleen:- thymus:- bone marrow:- adipose:- bone:- skin:-
GeneChip cerebrum:6.25 cerebellum:6.25 brain stem:6.32 corpus callosum/glia:6.14 pineal gland:- peripheral nerve:5.97 spine:6.13 retina:- eye:- artery/aorta:6.26 vein:6.27 lymphnode:5.97 peripheral blood:- spleen:5.92 thymus:5.90 bone marrow:6.36 adipose:6.21 bone:- skin:6.32
CAGE cerebrum:0.02 cerebellum:- brain stem:0 corpus callosum/glia:0.07 pineal gland:0 peripheral nerve:- spine:0.62 retina:- eye:- artery/aorta:0 vein:0 lymphnode:0 peripheral blood:- spleen:0 thymus:0 bone marrow:- adipose:0.14 bone:- skin:-
RNA-seq cerebrum:0 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:0 peripheral blood:- spleen:- thymus:- bone marrow:- adipose:0 bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST uterus:- placenta:- prostate:- ovary:- testis:- heart:- muscle:- esophagus:- stomach:- intestine:- colon:-     liver/hepato:-        lung:-    bladder:- kidney:- pituitary:- thyroid/parathyroid:- adrenal gland:- pancreas:- breast:- salivary:-
GeneChip uterus:6.09 placenta:6.36 prostate:5.94 ovary:6.19 testis:6.40 heart:6.27 muscle:6.78 esophagus:6.19 stomach:6 intestine:6.27 colon:6.24 liver/hepato:6.19 lung:6.13 bladder:- kidney:6.21 pituitary:6.33 thyroid/parathyroid:6.16 adrenal gland:6.26 pancreas:6.30 breast:6.02 salivary:6.24
CAGE uterus:0.04 placenta:0 prostate:0 ovary:0 testis:0.21 heart:0 muscle:0 esophagus:0 stomach:- intestine:0 colon:0     liver/hepato:0    lung:0 bladder:0 kidney:0 pituitary:0 thyroid/parathyroid:0 adrenal gland:- pancreas:0 breast:0 salivary:0
RNA-seq uterus:- placenta:- prostate:0 ovary:0 testis:1.11 heart:0.05 muscle:0.21 esophagus:- stomach:- intestine:- colon:0     liver/hepato:0        lung:0    bladder:- kidney:0 pituitary:- thyroid/parathyroid:0.09 adrenal gland:0 pancreas:- breast:0.02 salivary:-

Gene Information

IDs

Refseq ID NM_001098834
Gene ID 2636
Unigene ID Hs.647114
Probe set ID 217011_at  [HG-U133_Plus_2]
Ensembl ID ENSG00000164900
GTEx ID ENSG00000164900

Orthologous Gene

Mouse[1]  NM_015739
Rat[1]  NM_015739

Chromosomal Region

7q36.1  [150,845,676  -  150,871,832]

Gene Family (Interpro ID)

IPR001356  Homeobox
IPR009057  Homeodomain-like
IPR012287  Homeodomain-related

Link to Pubmed  (Pubmed ID)

7903253
8097731
12853948
16597639

Gene Ontology  (GO ID)

Biological Process

GO:0006355  regulation of transcription, DNA-dependent
GO:0006351  transcription, DNA-dependent

Cellular Component

GO:0000228  nuclear chromosome

Molecular Function

GO:0043565  sequence-specific DNA binding
GO:0003700  transcription factor activity