H6 family homeobox 1

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Synonym

homeobox (H6 family) 1, homeo box (H6 family) 1, HMX1, H6

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST cerebrum:- cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:64.60 artery/aorta:- vein:- lymphnode:- peripheral blood:- spleen:- thymus:- bone marrow:- adipose:- bone:- skin:-
GeneChip cerebrum:7.02 cerebellum:7.19 brain stem:7.11 corpus callosum/glia:6.97 pineal gland:- peripheral nerve:6.65 spine:6.56 retina:- eye:- artery/aorta:6.61 vein:7.12 lymphnode:6.64 peripheral blood:- spleen:6.51 thymus:5.99 bone marrow:6.96 adipose:6.75 bone:- skin:6.59
CAGE cerebrum:0.49 cerebellum:- brain stem:0.53 corpus callosum/glia:0.52 pineal gland:0 peripheral nerve:- spine:0.30 retina:- eye:- artery/aorta:0 vein:0 lymphnode:0.12 peripheral blood:- spleen:0 thymus:0.06 bone marrow:- adipose:0 bone:- skin:-
RNA-seq cerebrum:0.11 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:0.16 peripheral blood:- spleen:- thymus:- bone marrow:- adipose:0 bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST uterus:- placenta:- prostate:- ovary:- testis:8.70 heart:- muscle:- esophagus:- stomach:- intestine:- colon:-     liver/hepato:-        lung:-    bladder:- kidney:- pituitary:- thyroid/parathyroid:- adrenal gland:- pancreas:- breast:9.30 salivary:-
GeneChip uterus:6.59 placenta:6.51 prostate:6.16 ovary:6.76 testis:6.45 heart:7.09 muscle:7.17 esophagus:6.86 stomach:6.77 intestine:6.94 colon:7.20 liver/hepato:7.14 lung:6.75 bladder:- kidney:7 pituitary:6.75 thyroid/parathyroid:6.66 adrenal gland:6.96 pancreas:7.34 breast:6.45 salivary:7.10
CAGE uterus:0 placenta:0 prostate:0.08 ovary:0 testis:0.46 heart:0 muscle:0.05 esophagus:0 stomach:- intestine:0 colon:0     liver/hepato:0    lung:0 bladder:0 kidney:0 pituitary:0.10 thyroid/parathyroid:0.06 adrenal gland:- pancreas:0 breast:0 salivary:0.36
RNA-seq uterus:- placenta:- prostate:0.10 ovary:0 testis:0.25 heart:0.02 muscle:0 esophagus:- stomach:- intestine:- colon:0.02     liver/hepato:0        lung:0    bladder:- kidney:0 pituitary:- thyroid/parathyroid:0.01 adrenal gland:0.01 pancreas:- breast:0.04 salivary:-

Gene Information

IDs

Refseq ID NM_018942
Gene ID 3166
Unigene ID Hs.104134
Probe set ID 207353_s_at  [HG-U133_Plus_2]
Ensembl ID ENSG00000215612
GTEx ID ENSG00000215612

Orthologous Gene

Mouse[1]  NM_010445
Rat[1]  NM_001108363

Chromosomal Region

4p16.1  [8,847,931  -  8,873,543]

Gene Family (Interpro ID)

IPR001356  Homeobox
IPR009057  Homeodomain-like
IPR012287  Homeodomain-related

Link to Pubmed  (Pubmed ID)

1360670
7647458
10206974
12477932
18423520
18976975
21417677
21697133

Gene Ontology  (GO ID)

Biological Process

GO:0007275  multicellular organismal development
GO:0045892  negative regulation of transcription, DNA-dependent
GO:0006351  transcription, DNA-dependent

Cellular Component

GO:0005634  nucleus

Molecular Function

GO:0003677  DNA binding
GO:0043565  sequence-specific DNA binding
GO:0003700  transcription factor activity