heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A)

Synonym

Heterogeneous nuclear ribonucleoprotein U, hnRNPU, hnRNP U, SAF-A, pp120, U21.1, Scaffold attachment factor A, SAFA, HNRPU, HNRNPU

normal 40 tissues
cell lines, primary cells, adult tissues and fetal tissues (FANTOM5 CAGE)

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain

blood

connective

EST

cerebrum:-

cerebellum:-

brain stem:-

corpus callosum/glia:-

pineal gland:-

peripheral nerve:-

spine:-

retina:-

eye:-

artery/aorta:-

vein:-

lymphnode:-

peripheral blood:-

spleen:-

thymus:-

bone marrow:-

adipose:-

bone:-

skin:-

GeneChip

cerebrum:7.73

cerebellum:8.39

brain stem:7.65

corpus callosum/glia:8.31

pineal gland:-

peripheral nerve:7.91

spine:8.02

retina:-

eye:-

artery/aorta:7.93

vein:8.12

lymphnode:8.33

peripheral blood:-

spleen:8.31

thymus:9.44

bone marrow:8.51

adipose:8.10

bone:-

skin:7.78

CAGE

cerebrum:5.75

cerebellum:-

brain stem:5.80

corpus callosum/glia:5.87

pineal gland:5.67

peripheral nerve:-

spine:5.74

retina:-

eye:-

artery/aorta:5.78

vein:5.90

lymphnode:5.71

peripheral blood:-

spleen:5.95

thymus:6.45

bone marrow:-

adipose:5.85

bone:-

skin:-

RNA-seq

cerebrum:5.28

cerebellum:-

brain stem:-

corpus callosum/glia:-

pineal gland:-

peripheral nerve:-

spine:-

retina:-

eye:-

artery/aorta:-

vein:-

lymphnode:5.20

peripheral blood:-

spleen:-

thymus:-

bone marrow:-

adipose:5.55

bone:-

skin:-

reproductive

muscular

alimentary

liver

lung

urinary

endo/exo-crine

EST

uterus:-

placenta:7.30

prostate:-

ovary:-

testis:13

heart:-

muscle:-

esophagus:-

stomach:-

intestine:-

colon:-

liver/hepato:-

lung:-

bladder:-

kidney:-

pituitary:-

thyroid/parathyroid:-

adrenal gland:-

pancreas:-

breast:-

salivary:-

GeneChip

uterus:8.53

placenta:8.42

prostate:8.26

ovary:8.90

testis:9.01

heart:7.92

muscle:7.87

esophagus:8.16

stomach:7.94

intestine:8.07

colon:7.93

liver/hepato:7.30

lung:8.51

bladder:-

kidney:7.56

pituitary:7.70

thyroid/parathyroid:8.12

adrenal gland:8.14

pancreas:7.93

breast:8.12

salivary:7.96

CAGE

uterus:5.80

placenta:5.70

prostate:5.88

ovary:6.15

testis:5.76

heart:5.71

muscle:5.61

esophagus:5.74

stomach:-

intestine:5.72

colon:5.52

liver/hepato:5.62

lung:5.71

bladder:5.88

kidney:5.74

pituitary:5.69

thyroid/parathyroid:5.70

adrenal gland:-

pancreas:5.53

breast:5.62

salivary:5.16

RNA-seq

uterus:-

placenta:-

prostate:5.33

ovary:6.46

testis:6.13

heart:4.46

muscle:5.00

esophagus:-

stomach:-

intestine:-

colon:5.62

liver/hepato:4.22

lung:4.66

bladder:-

kidney:5.43

pituitary:-

thyroid/parathyroid:6.06

adrenal gland:5.60

pancreas:-

breast:5.38

salivary:-

IDs

Refseq ID	NM_004501
Gene ID	3192
Unigene ID	Hs.106212
Probe set ID	200593_s_at [HG-U133_Plus_2]
Ensembl ID	ENSG00000153187
GTEx ID	ENSG00000153187

Orthologous Gene

Mouse[3]	NM_016805
Rat [0]

Chromosomal Region

1q44 [245,014,468 - 245,027,844]

Search genes near this gene
- Between -5kb and +5kb
- Between -10kb and +10kb

Gene Family (Interpro ID)

IPR001870	B302 (SPRY)-like
IPR003877	SPla/RYanodine receptor SPRY
IPR018355	SPla/RYanodine receptor subgroup

Gene Ontology (GO ID)

Biological Process

GO:0070934	CRD-mediated mRNA stabilization
GO:0010467	gene expression
GO:0000398	nuclear mRNA splicing, via spliceosome
GO:0006396	RNA processing
GO:0008380	RNA splicing

Cellular Component

GO:0071013	catalytic step 2 spliceosome
GO:0009986	cell surface
GO:0070937	CRD-mediated mRNA stability complex
GO:0005654	nucleoplasm
GO:0030529	ribonucleoprotein complex

Molecular Function

GO:0005524	ATP binding
GO:0003677	DNA binding
GO:0005515	protein binding
GO:0003723	RNA binding

heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A)

Synonym

Expression Pattern

Choropleth map on BodyParts3D

Classification in 40 Organs

Gene Information

IDs

Orthologous Gene

Chromosomal Region

Gene Family (Interpro ID)

Link to Pubmed (Pubmed ID)

Gene Ontology (GO ID)

Biological Process

Cellular Component

Molecular Function