homeobox C6

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Synonym

CP25, HOXC6, homeo box C6, HOX3C, Hox-3C, HHO.C8, homeobox C6, Homeobox protein Hox-C6

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST nodata
GeneChip cerebrum:4.72 cerebellum:4.78 brain stem:5.43 corpus callosum/glia:4.76 pineal gland:- peripheral nerve:9.50 spine:8.65 retina:- eye:- artery/aorta:6.43 vein:8.32 lymphnode:7.05 peripheral blood:- spleen:4.79 thymus:4.64 bone marrow:5.18 adipose:8.59 bone:- skin:7.92
CAGE cerebrum:0 cerebellum:- brain stem:0.76 corpus callosum/glia:0.13 pineal gland:0 peripheral nerve:- spine:1.58 retina:- eye:- artery/aorta:0.18 vein:0.34 lymphnode:0.46 peripheral blood:- spleen:0.32 thymus:0 bone marrow:- adipose:1.12 bone:- skin:-
RNA-seq cerebrum:0.01 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:2.01 peripheral blood:- spleen:- thymus:- bone marrow:- adipose:1.53 bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST nodata
GeneChip uterus:6.24 placenta:7.73 prostate:6.28 ovary:9.55 testis:7.55 heart:5.72 muscle:7.65 esophagus:5.10 stomach:5.58 intestine:6.66 colon:6.25 liver/hepato:4.53 lung:5.10 bladder:- kidney:9.74 pituitary:4.84 thyroid/parathyroid:5.44 adrenal gland:9.48 pancreas:5.43 breast:9.39 salivary:4.51
CAGE uterus:0.44 placenta:0.16 prostate:0.21 ovary:2.85 testis:0.76 heart:0.15 muscle:1.58 esophagus:0.90 stomach:- intestine:1.64 colon:0.84     liver/hepato:0    lung:0.27 bladder:0.18 kidney:0.82 pituitary:0 thyroid/parathyroid:0.06 adrenal gland:- pancreas:0 breast:2.34 salivary:0
RNA-seq uterus:- placenta:- prostate:0.79 ovary:3.27 testis:1.28 heart:0.04 muscle:1.89 esophagus:- stomach:- intestine:- colon:0.75     liver/hepato:0        lung:0.26    bladder:- kidney:0.93 pituitary:- thyroid/parathyroid:0.12 adrenal gland:1.76 pancreas:- breast:2.03 salivary:-

Gene Information

IDs

Refseq ID NM_004503
Gene ID 3223
Unigene ID -
Probe set ID 206858_s_at  [HG-U133_Plus_2]
Ensembl ID ENSG00000197757
GTEx ID ENSG00000197757

Orthologous Gene

Mouse[2]  NM_010465
Rat[2]  NM_010465

Chromosomal Region

12q13.13  [54,384,408  -  54,424,607]

Gene Family (Interpro ID)

IPR001356  Homeobox
IPR009057  Homeodomain-like
IPR012287  Homeodomain-related

Link to Pubmed  (Pubmed ID)

1358459
1973146
2574852
2576652
2878432
2885844
2898768
7738096
8646877
8870653
8890171
11857506
12477932
15489334
15637592
15839736
16344560
17488478
19236766
21683083
21832049
21890473
21906983
22504420
22896703
22907429
23581417
24250222
24525058

Gene Ontology  (GO ID)

Biological Process

GO:0009952  anterior/posterior pattern formation
GO:0048706  embryonic skeletal system development
GO:0007275  multicellular organismal development
GO:0006357  regulation of transcription from RNA polymerase II promoter
GO:0006351  transcription, DNA-dependent

Cellular Component

GO:0005634  nucleus

Molecular Function

GO:0043565  sequence-specific DNA binding
GO:0003714  transcription corepressor activity
GO:0003700  transcription factor activity