protocadherin 9

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Synonym

protocadherin 9, Protocadherin-9 precursor, PCDH9

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST nodata
GeneChip cerebrum:9.24 cerebellum:6.96 brain stem:9.17 corpus callosum/glia:9.28 pineal gland:- peripheral nerve:7.87 spine:8.95 retina:- eye:- artery/aorta:5.11 vein:4.30 lymphnode:4.64 peripheral blood:- spleen:4.19 thymus:4.39 bone marrow:4.28 adipose:5.24 bone:- skin:4.57
CAGE cerebrum:3.22 cerebellum:- brain stem:3.97 corpus callosum/glia:3.35 pineal gland:1.08 peripheral nerve:- spine:3.13 retina:- eye:- artery/aorta:0.69 vein:0.47 lymphnode:0.17 peripheral blood:- spleen:0.56 thymus:1.31 bone marrow:- adipose:0.63 bone:- skin:-
RNA-seq cerebrum:4.81 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:0.82 peripheral blood:- spleen:- thymus:- bone marrow:- adipose:0.27 bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST nodata
GeneChip uterus:4.46 placenta:3.83 prostate:5.01 ovary:4.31 testis:4.14 heart:5.40 muscle:4.60 esophagus:4.66 stomach:4.33 intestine:4.40 colon:4.56 liver/hepato:4.36 lung:4.13 bladder:- kidney:4.59 pituitary:5.48 thyroid/parathyroid:4.46 adrenal gland:5.02 pancreas:4.18 breast:4.69 salivary:4.88
CAGE uterus:0.44 placenta:0 prostate:1.06 ovary:0.37 testis:0.53 heart:1.09 muscle:0.46 esophagus:0.97 stomach:- intestine:0.14 colon:0.53     liver/hepato:0.84    lung:0.83 bladder:0.26 kidney:0.44 pituitary:1.09 thyroid/parathyroid:0.73 adrenal gland:- pancreas:0 breast:0.90 salivary:0
RNA-seq uterus:- placenta:- prostate:1.23 ovary:0.18 testis:0.31 heart:0.92 muscle:0.34 esophagus:- stomach:- intestine:- colon:1.33     liver/hepato:0.27        lung:0.35    bladder:- kidney:1.32 pituitary:- thyroid/parathyroid:1.20 adrenal gland:0.69 pancreas:- breast:1.50 salivary:-

Gene Information

IDs

Refseq ID NM_020403
Gene ID 5101
Unigene ID -
Probe set ID 219738_s_at  [HG-U133_Plus_2]
Ensembl ID ENSG00000184226
GTEx ID ENSG00000184226

Orthologous Gene

Mouse[2]  NM_001081377
Rat [0]  

Chromosomal Region

13q21.32  [66,876,967  -  67,804,468]

Gene Family (Interpro ID)

IPR002126  Cadherin
IPR015919  Cadherin-like

Link to Pubmed  (Pubmed ID)

9787079
10716726
10817752
10835267
12477932
14702039
15057823
16147992
16344560
19322201
19913121
20379614
20628086
21552555
21875946
22300792
22424883
23064961
24250222
24722188

Gene Ontology  (GO ID)

Biological Process

GO:0007156  homophilic cell adhesion

Cellular Component

GO:0016021  integral to membrane
GO:0005886  plasma membrane

Molecular Function

GO:0005509  calcium ion binding