PHD finger protein 11

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Synonym

IGHER, PHD finger protein 11, NY-REN-34, IGEL, RP11-185C18.3, IGER, PHF11, BCAP, NY-REN-34 antigen, NYREN34, BRCA1 C-terminus-associated protein, APY

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST cerebrum:22.50 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:30.70 spine:- retina:- eye:17.60 artery/aorta:- vein:- lymphnode:141.50 peripheral blood:18.20 spleen:75.60 thymus:25.80 bone marrow:118.10 adipose:80.70 bone:38.40 skin:259.20
GeneChip cerebrum:7.08 cerebellum:5.74 brain stem:7.43 corpus callosum/glia:7.97 pineal gland:- peripheral nerve:7.64 spine:7.88 retina:- eye:- artery/aorta:8.12 vein:7.87 lymphnode:8.85 peripheral blood:- spleen:8.97 thymus:8.92 bone marrow:7.64 adipose:8.01 bone:- skin:8.02
CAGE cerebrum:2.98 cerebellum:- brain stem:3.26 corpus callosum/glia:3.35 pineal gland:3.25 peripheral nerve:- spine:3.72 retina:- eye:- artery/aorta:3.74 vein:4.06 lymphnode:3.85 peripheral blood:- spleen:3.84 thymus:3.83 bone marrow:- adipose:3.67 bone:- skin:-
RNA-seq cerebrum:2.98 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:4.10 peripheral blood:- spleen:- thymus:- bone marrow:- adipose:3.20 bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST uterus:45.60 placenta:25.50 prostate:123.90 ovary:- testis:26 heart:51.10 muscle:- esophagus:- stomach:2591.60 intestine:97.20 colon:67.80     liver/hepato:52.80        lung:44    bladder:- kidney:83.20 pituitary:- thyroid/parathyroid:- adrenal gland:- pancreas:26.70 breast:37.20 salivary:-
GeneChip uterus:8.24 placenta:7.75 prostate:8.30 ovary:8.30 testis:7.06 heart:7.64 muscle:6.39 esophagus:7.69 stomach:8.13 intestine:7.65 colon:7.41 liver/hepato:7.90 lung:8.42 bladder:- kidney:7.65 pituitary:7.25 thyroid/parathyroid:8.55 adrenal gland:8.57 pancreas:6.65 breast:8.21 salivary:8.31
CAGE uterus:3.51 placenta:3.37 prostate:3.54 ovary:3.38 testis:2.87 heart:3.58 muscle:2.86 esophagus:3.36 stomach:- intestine:3.53 colon:3.42     liver/hepato:2.74    lung:3.62 bladder:3.63 kidney:3.48 pituitary:2.97 thyroid/parathyroid:3.41 adrenal gland:- pancreas:3.47 breast:3.73 salivary:3.65
RNA-seq uterus:- placenta:- prostate:4.19 ovary:4.49 testis:3.79 heart:2.64 muscle:1.48 esophagus:- stomach:- intestine:- colon:3.73     liver/hepato:2.43        lung:3.64    bladder:- kidney:3.81 pituitary:- thyroid/parathyroid:4.28 adrenal gland:4.60 pancreas:- breast:4.02 salivary:-

Gene Information

IDs

Refseq ID NM_001040444
Gene ID 51131
Unigene ID Hs.369039
Probe set ID 221816_s_at  [HG-U133_Plus_2]
Ensembl ID ENSG00000136147
GTEx ID ENSG00000136147

Orthologous Gene

Mouse[4]  NM_172603, NM_199015, NM_001164329, NM_001164289, NM_001164327
Rat[1]  NM_001024272, NM_199015, NM_001164329, NM_001164289, NM_001164327

Chromosomal Region

13q14.2  [50,069,746  -  50,103,123]

Gene Family (Interpro ID)

IPR001965  Zinc finger, PHD-type

Link to Pubmed  (Pubmed ID)

8125298
10508479
12477932
12754510
15057823
15489334
15674390
16344560
17702965
17703412
18405956
19237393
19247692
19258923
19264973
19386584
19590686
19672052
19951440
19996348
20085599
20421878
20503287
20701904
20716621
20717939
21320718
21348951
21988832

Gene Ontology  (GO ID)

Biological Process

GO:0006355  regulation of transcription, DNA-dependent
GO:0006351  transcription, DNA-dependent

Cellular Component

GO:0005634  nucleus

Molecular Function

GO:0008270  zinc ion binding