lysine (K)-specific demethylase 3B

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Synonym

Nuclear protein 5qNCA, 5qNCA, C5orf7, JMJD1B, jumonji domain containing 1B, KIAA1082, chromosome 5 open reading frame 7, JHDM2B, Jumonji domain-containing protein 1B

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST nodata
GeneChip cerebrum:7.86 cerebellum:7.99 brain stem:7.70 corpus callosum/glia:8.17 pineal gland:- peripheral nerve:7.93 spine:8.07 retina:- eye:- artery/aorta:7.95 vein:8.01 lymphnode:8.19 peripheral blood:- spleen:8.31 thymus:8.38 bone marrow:8.25 adipose:8.11 bone:- skin:7.95
CAGE cerebrum:2.71 cerebellum:- brain stem:2.80 corpus callosum/glia:3.12 pineal gland:3.09 peripheral nerve:- spine:2.58 retina:- eye:- artery/aorta:3.06 vein:2.56 lymphnode:2.72 peripheral blood:- spleen:2.55 thymus:3.18 bone marrow:- adipose:2.72 bone:- skin:-
RNA-seq cerebrum:3.12 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:3.37 peripheral blood:- spleen:- thymus:- bone marrow:- adipose:3.80 bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST nodata
GeneChip uterus:8.31 placenta:8.01 prostate:8.34 ovary:8.66 testis:8.18 heart:7.85 muscle:7.99 esophagus:7.93 stomach:8.02 intestine:7.88 colon:8.07 liver/hepato:7.39 lung:8.09 bladder:- kidney:8.02 pituitary:8.01 thyroid/parathyroid:8.39 adrenal gland:7.91 pancreas:7.30 breast:8.47 salivary:7.88
CAGE uterus:2.85 placenta:2.38 prostate:2.84 ovary:3.00 testis:2.65 heart:2.57 muscle:2.73 esophagus:2.65 stomach:- intestine:2.79 colon:3.05     liver/hepato:1.76    lung:2.73 bladder:2.94 kidney:2.56 pituitary:2.82 thyroid/parathyroid:2.85 adrenal gland:- pancreas:2.98 breast:2.74 salivary:2.97
RNA-seq uterus:- placenta:- prostate:4.32 ovary:4.18 testis:3.94 heart:3.25 muscle:4.46 esophagus:- stomach:- intestine:- colon:3.55     liver/hepato:2.01        lung:3.40    bladder:- kidney:3.23 pituitary:- thyroid/parathyroid:4.24 adrenal gland:3.80 pancreas:- breast:3.56 salivary:-

Gene Information

IDs

Refseq ID NM_016604
Gene ID 51780
Unigene ID -
Probe set ID 201643_x_at  [HG-U133_Plus_2]
Ensembl ID ENSG00000120733
GTEx ID ENSG00000120733

Orthologous Gene

Mouse[1]  NM_001081256
Rat[1]  NM_001081256

Chromosomal Region

5q31.2  [137,688,285  -  137,772,717]

Gene Family (Interpro ID)

IPR003347  Transcription factor jumonji/aspartyl beta-hydroxylase

Link to Pubmed  (Pubmed ID)

10470851
10737800
11087669
11161817
11687974
12168954
12477932
15138608
15231748
15302935
15489334
15635413
16603237
17081983
18029348
19322201
19471022
19615732
20379614
20400511
21102462
21139048
21693764
21890473
21906983
21963094
22505724
22615488
22863883
23000965
23266085
23383273
23455924
24550385
24816145

Gene Ontology  (GO ID)

Biological Process

GO:0016568  chromatin modification
GO:0006355  regulation of transcription, DNA-dependent
GO:0006351  transcription, DNA-dependent

Cellular Component

GO:0005730  nucleolus
GO:0005634  nucleus

Molecular Function

GO:0046872  metal ion binding
GO:0016702  oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen