coiled-coil domain containing 40

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Synonym

KIAA1640, FLJ32021, FLJ20753, coiled-coil domain containing 40, CCDC40

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST cerebrum:11.90 cerebellum:12.60 brain stem:- corpus callosum/glia:29.20 pineal gland:- peripheral nerve:- spine:- retina:- eye:23.50 artery/aorta:- vein:- lymphnode:- peripheral blood:- spleen:18.90 thymus:- bone marrow:- adipose:40.30 bone:12.80 skin:14.40
GeneChip cerebrum:4.75 cerebellum:5.10 brain stem:4.74 corpus callosum/glia:4.75 pineal gland:- peripheral nerve:4.41 spine:4.50 retina:- eye:- artery/aorta:4.99 vein:4.75 lymphnode:5.08 peripheral blood:- spleen:4.93 thymus:4.99 bone marrow:4.74 adipose:4.69 bone:- skin:4.92
CAGE cerebrum:1.60 cerebellum:- brain stem:1.67 corpus callosum/glia:2.49 pineal gland:2.64 peripheral nerve:- spine:1.68 retina:- eye:- artery/aorta:1.72 vein:0.79 lymphnode:0.80 peripheral blood:- spleen:0.32 thymus:0.06 bone marrow:- adipose:0.84 bone:- skin:-
RNA-seq cerebrum:0.65 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:0.24 peripheral blood:- spleen:- thymus:- bone marrow:- adipose:0.08 bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST uterus:54.70 placenta:3.60 prostate:11.30 ovary:- testis:108.20 heart:- muscle:- esophagus:- stomach:- intestine:- colon:-     liver/hepato:-        lung:44    bladder:- kidney:10.40 pituitary:- thyroid/parathyroid:- adrenal gland:- pancreas:8.90 breast:18.60 salivary:-
GeneChip uterus:4.91 placenta:4.46 prostate:4.86 ovary:5.11 testis:5.09 heart:4.69 muscle:4.94 esophagus:4.79 stomach:4.58 intestine:4.72 colon:4.74 liver/hepato:4.92 lung:4.72 bladder:- kidney:4.84 pituitary:4.80 thyroid/parathyroid:4.96 adrenal gland:5.08 pancreas:5.18 breast:4.84 salivary:5.14
CAGE uterus:1.29 placenta:0.95 prostate:0.91 ovary:1.82 testis:3.04 heart:1.79 muscle:0.96 esophagus:1.01 stomach:- intestine:0.73 colon:0.71     liver/hepato:0.55    lung:1.95 bladder:0.98 kidney:1.84 pituitary:2.81 thyroid/parathyroid:1.38 adrenal gland:- pancreas:0.58 breast:1.36 salivary:1.28
RNA-seq uterus:- placenta:- prostate:0.43 ovary:2.06 testis:2.18 heart:0.33 muscle:0.16 esophagus:- stomach:- intestine:- colon:0.35     liver/hepato:0.17        lung:1.42    bladder:- kidney:0.72 pituitary:- thyroid/parathyroid:0.48 adrenal gland:0.51 pancreas:- breast:0.65 salivary:-

Gene Information

IDs

Refseq ID NM_017950
Gene ID 55036
Unigene ID Hs.202542
Probe set ID 220593_s_at  [HG-U133_Plus_2]
Ensembl ID ENSG00000141519
GTEx ID ENSG00000141519

Orthologous Gene

Mouse[1]  NM_175430
Rat[1]  NM_175430

Chromosomal Region

17q25.3  [78,010,435  -  78,074,412]

Gene Family (Interpro ID)

-

Link to Pubmed  (Pubmed ID)

10997877
12477932
14702039
16344560
20301301
20714864
21131974
21832049
22693285
23255504
23382691

Gene Ontology  (GO ID)

Biological Process

GO:0070286  axonemal dynein complex assembly
GO:0060287  cilium movement involved in determination of left/right asymmetry
GO:0003351  epithelial cilium movement
GO:0001947  heart looping
GO:0030324  lung development
GO:0003356  regulation of cilium beat frequency

Cellular Component

GO:0005929  cilium
GO:0005737  cytoplasm

Molecular Function

GO:0003674  molecular_function