BARX homeobox 1

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Synonym

BARX1, BarH-like homeobox 1, Homeobox protein BarH-like 1

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST cerebrum:- cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:5.90 artery/aorta:- vein:- lymphnode:- peripheral blood:- spleen:- thymus:- bone marrow:- adipose:- bone:12.80 skin:-
GeneChip cerebrum:4.56 cerebellum:4.97 brain stem:4.59 corpus callosum/glia:4.59 pineal gland:- peripheral nerve:4.22 spine:4.20 retina:- eye:- artery/aorta:4.46 vein:4.85 lymphnode:4.63 peripheral blood:- spleen:4.19 thymus:3.97 bone marrow:4.53 adipose:4.68 bone:- skin:4.83
CAGE cerebrum:0.05 cerebellum:- brain stem:0 corpus callosum/glia:0 pineal gland:0 peripheral nerve:- spine:0 retina:- eye:- artery/aorta:0 vein:0.18 lymphnode:0.26 peripheral blood:- spleen:0 thymus:0 bone marrow:- adipose:0 bone:- skin:-
RNA-seq cerebrum:0 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:0.44 peripheral blood:- spleen:- thymus:- bone marrow:- adipose:0.02 bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST uterus:- placenta:- prostate:- ovary:- testis:13 heart:- muscle:- esophagus:- stomach:- intestine:- colon:-     liver/hepato:-        lung:4.90    bladder:- kidney:- pituitary:- thyroid/parathyroid:- adrenal gland:- pancreas:- breast:- salivary:-
GeneChip uterus:4.45 placenta:4.12 prostate:4.16 ovary:4.63 testis:4.42 heart:4.71 muscle:4.82 esophagus:4.89 stomach:6 intestine:4.67 colon:4.60 liver/hepato:4.53 lung:4.34 bladder:- kidney:4.48 pituitary:4.37 thyroid/parathyroid:4.40 adrenal gland:4.56 pancreas:5.08 breast:4.42 salivary:4.64
CAGE uterus:0.04 placenta:0 prostate:0 ovary:0.14 testis:1.11 heart:0 muscle:0 esophagus:0.09 stomach:- intestine:0 colon:0.29     liver/hepato:0.14    lung:0 bladder:0.09 kidney:0 pituitary:0.42 thyroid/parathyroid:0.06 adrenal gland:- pancreas:0 breast:0 salivary:0.62
RNA-seq uterus:- placenta:- prostate:0.06 ovary:0 testis:1.49 heart:0 muscle:0 esophagus:- stomach:- intestine:- colon:0.64     liver/hepato:0.01        lung:0    bladder:- kidney:0.03 pituitary:- thyroid/parathyroid:0.38 adrenal gland:0.06 pancreas:- breast:0.03 salivary:-

Gene Information

IDs

Refseq ID NM_021570
Gene ID 56033
Unigene ID Hs.164960
Probe set ID 219845_at  [HG-U133_Plus_2]
Ensembl ID ENSG00000131668
GTEx ID ENSG00000131668

Orthologous Gene

Mouse[1]  NM_007526
Rat[1]  NM_001108880

Chromosomal Region

9q22.32  [96,713,628  -  96,717,654]

Gene Family (Interpro ID)

IPR001356  Homeobox
IPR009057  Homeodomain-like
IPR012287  Homeodomain-related

Link to Pubmed  (Pubmed ID)

10995576
12477932
17486624
18708738
18978678
20634891
21900206
21988832
23314748
24121790

Gene Ontology  (GO ID)

Biological Process

GO:0009952  anterior/posterior pattern formation
GO:0007267  cell-cell signaling
GO:0055123  digestive system development
GO:0030855  epithelial cell differentiation
GO:0007275  multicellular organismal development
GO:0030178  negative regulation of Wnt receptor signaling pathway
GO:0006355  regulation of transcription, DNA-dependent
GO:0048536  spleen development
GO:0006351  transcription, DNA-dependent

Cellular Component

GO:0000228  nuclear chromosome

Molecular Function

GO:0003700  transcription factor activity