protocadherin gamma subfamily C, 5

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Synonym

PCDH-gamma-C5, PCDH-GAMMA-C5, MGC138288, MGC138286, protocadherin gamma subfamily C, 5, PCDHGC5, Protocadherin gamma C5 precursor

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST nodata
GeneChip cerebrum:9.89 cerebellum:9.87 brain stem:9.29 corpus callosum/glia:10.22 pineal gland:- peripheral nerve:9.22 spine:10.58 retina:- eye:- artery/aorta:9.20 vein:8.83 lymphnode:8.05 peripheral blood:- spleen:8.16 thymus:7.67 bone marrow:7.65 adipose:8.96 bone:- skin:8.66
CAGE cerebrum:3.33 cerebellum:- brain stem:1.69 corpus callosum/glia:2.51 pineal gland:0.36 peripheral nerve:- spine:1.31 retina:- eye:- artery/aorta:0.69 vein:0 lymphnode:0 peripheral blood:- spleen:0 thymus:0.06 bone marrow:- adipose:0 bone:- skin:-
RNA-seq cerebrum:0.06 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:0 peripheral blood:- spleen:- thymus:- bone marrow:- adipose:0 bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST nodata
GeneChip uterus:9.10 placenta:8.33 prostate:8.46 ovary:8.82 testis:8.28 heart:8.46 muscle:7.49 esophagus:8.48 stomach:8.31 intestine:8.17 colon:8.34 liver/hepato:7.91 lung:9.28 bladder:- kidney:8.02 pituitary:9.42 thyroid/parathyroid:8.71 adrenal gland:8.97 pancreas:8.04 breast:9.16 salivary:8.14
CAGE uterus:0.20 placenta:0 prostate:0.08 ovary:0.07 testis:0.53 heart:0.07 muscle:0 esophagus:0.18 stomach:- intestine:0.07 colon:0.08     liver/hepato:0    lung:0.14 bladder:0.09 kidney:0 pituitary:0.19 thyroid/parathyroid:0.06 adrenal gland:- pancreas:0 breast:0 salivary:0
RNA-seq uterus:- placenta:- prostate:0 ovary:0 testis:0 heart:0.36 muscle:0 esophagus:- stomach:- intestine:- colon:0     liver/hepato:0        lung:0.24    bladder:- kidney:0.04 pituitary:- thyroid/parathyroid:0 adrenal gland:0 pancreas:- breast:0 salivary:-

Gene Information

IDs

Refseq ID NM_032407
Gene ID 56097
Unigene ID -
Probe set ID 215836_s_at  [HG-U133_Plus_2]
Ensembl ID ENSG00000240764
GTEx ID ENSG00000240764

Orthologous Gene

Mouse[9]  NM_033578, NM_033581, NM_033582, NM_033583, NM_033586, NM_033591, NM_033592, NM_033594, NM_033595
Rat[9]  NM_033578, NM_033581, NM_033582, NM_033583, NM_033586, NM_033591, NM_033592, NM_033594, NM_033595

Chromosomal Region

5q31.3  [140,868,808  -  140,892,546]

Gene Family (Interpro ID)

IPR002126  Cadherin
IPR015919  Cadherin-like

Link to Pubmed  (Pubmed ID)

10380929
10716726
10817752
10835267
11230163
12477932
18029348
21832049

Gene Ontology  (GO ID)

Biological Process

GO:0007156  homophilic cell adhesion

Cellular Component

GO:0016021  integral to membrane
GO:0005886  plasma membrane

Molecular Function

GO:0005509  calcium ion binding