pogo transposable element with KRAB domain

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Synonym

POGK, KIAA15131, LST003, KIAA1513, pogo transposable element with KRAB domain, LST003/SLTP003, Pogo transposable element with KRAB domain, BASS2

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST cerebrum:78.20 cerebellum:12.60 brain stem:- corpus callosum/glia:58.30 pineal gland:- peripheral nerve:122.70 spine:112.30 retina:- eye:17.60 artery/aorta:- vein:- lymphnode:101.10 peripheral blood:18.20 spleen:18.90 thymus:64.40 bone marrow:78.70 adipose:40.30 bone:51.20 skin:38.40
GeneChip cerebrum:7.56 cerebellum:7.36 brain stem:7.53 corpus callosum/glia:8.21 pineal gland:- peripheral nerve:7.60 spine:7.76 retina:- eye:- artery/aorta:6.75 vein:6.51 lymphnode:6.76 peripheral blood:- spleen:7.02 thymus:6.61 bone marrow:6.47 adipose:6.56 bone:- skin:6.87
CAGE cerebrum:3.79 cerebellum:- brain stem:3.80 corpus callosum/glia:4.10 pineal gland:3.64 peripheral nerve:- spine:4.19 retina:- eye:- artery/aorta:3.82 vein:3.25 lymphnode:3.24 peripheral blood:- spleen:3.32 thymus:2.89 bone marrow:- adipose:2.95 bone:- skin:-
RNA-seq cerebrum:3.79 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:4.14 peripheral blood:- spleen:- thymus:- bone marrow:- adipose:2.94 bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST uterus:82 placenta:29.10 prostate:- ovary:- testis:34.60 heart:25.50 muscle:- esophagus:342.80 stomach:- intestine:- colon:17     liver/hepato:10.60        lung:78.20    bladder:- kidney:31.20 pituitary:- thyroid/parathyroid:- adrenal gland:50.80 pancreas:80 breast:46.50 salivary:-
GeneChip uterus:7.22 placenta:7.41 prostate:7.01 ovary:7.16 testis:6.28 heart:6.62 muscle:6.17 esophagus:7.04 stomach:6.91 intestine:6.72 colon:7.02 liver/hepato:6.21 lung:7.28 bladder:- kidney:7.12 pituitary:6.52 thyroid/parathyroid:6.66 adrenal gland:6.23 pancreas:6.50 breast:7.14 salivary:6.37
CAGE uterus:3.33 placenta:3.36 prostate:3.09 ovary:3.28 testis:2.70 heart:3.48 muscle:2.63 esophagus:3.14 stomach:- intestine:2.70 colon:3.33     liver/hepato:2.74    lung:3.77 bladder:3.10 kidney:3.01 pituitary:3.09 thyroid/parathyroid:3.09 adrenal gland:- pancreas:3.32 breast:4.00 salivary:3.08
RNA-seq uterus:- placenta:- prostate:3.88 ovary:4.31 testis:3.21 heart:2.54 muscle:1.98 esophagus:- stomach:- intestine:- colon:3.47     liver/hepato:2.61        lung:3.59    bladder:- kidney:3.90 pituitary:- thyroid/parathyroid:3.29 adrenal gland:3.38 pancreas:- breast:2.77 salivary:-

Gene Information

IDs

Refseq ID NM_017542
Gene ID 57645
Unigene ID Hs.432752
Probe set ID 218229_s_at  [HG-U133_Plus_2]
Ensembl ID ENSG00000143157
GTEx ID ENSG00000143157

Orthologous Gene

Mouse[2]  NM_001142948, NM_175170
Rat[1]  NM_001107194, NM_175170

Chromosomal Region

1q24.1  [166,808,681  -  166,825,581]

Gene Family (Interpro ID)

IPR001909  Krueppel-associated box
IPR003655  Krueppel-associated box-related
IPR006600  Pogo transposase / Cenp-B / PDC2, DNA-binding HTH domain

Link to Pubmed  (Pubmed ID)

8619474
9110174
10509013
10819331
12477932
14702039
16964243
18029348
19064610
19322201
19536175
20360068
21832049
21900206
21963094
22053931
22939624
24816145

Gene Ontology  (GO ID)

Biological Process

GO:0007275  multicellular organismal development
GO:0006355  regulation of transcription, DNA-dependent

Cellular Component

GO:0005634  nucleus

Molecular Function

GO:0003677  DNA binding
GO:0005515  protein binding