chemokine (C-C motif) ligand 20

Synonym

SCYA20, CKb4, CCL20, exodus-1, MIP-3a, Beta chemokine exodus-1, chemokine (C-C motif) ligand 20, MIP3A, LARC, Liver and activation-regulated chemokine, Small inducible cytokine A20 precursor, ST38, Macrophage inflammatory protein 3 alpha, CC chemokine LARC, MIP-3-alpha

normal 40 tissues
cell lines, primary cells, adult tissues and fetal tissues (FANTOM5 CAGE)

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain

blood

connective

EST

cerebrum:3.60

cerebellum:-

brain stem:-

corpus callosum/glia:-

pineal gland:-

peripheral nerve:-

spine:-

retina:-

eye:23.50

artery/aorta:89.90

vein:-

lymphnode:80.90

peripheral blood:-

spleen:-

thymus:-

bone marrow:-

adipose:-

bone:-

skin:72

GeneChip

cerebrum:4.02

cerebellum:4.13

brain stem:3.95

corpus callosum/glia:4.13

pineal gland:-

peripheral nerve:3.97

spine:4.22

retina:-

eye:-

artery/aorta:4.10

vein:4.24

lymphnode:7.31

peripheral blood:-

spleen:4.04

thymus:4.25

bone marrow:4.31

adipose:4.54

bone:-

skin:4.38

CAGE

cerebrum:0.02

cerebellum:-

brain stem:0.15

corpus callosum/glia:0

pineal gland:0.14

peripheral nerve:-

spine:0.36

retina:-

eye:-

artery/aorta:0.59

vein:1.29

lymphnode:3.45

peripheral blood:-

spleen:0.17

thymus:0.86

bone marrow:-

adipose:0.55

bone:-

skin:-

RNA-seq

cerebrum:0.10

cerebellum:-

brain stem:-

corpus callosum/glia:-

pineal gland:-

peripheral nerve:-

spine:-

retina:-

eye:-

artery/aorta:-

vein:-

lymphnode:0.50

peripheral blood:-

spleen:-

thymus:-

bone marrow:-

adipose:0.84

bone:-

skin:-

reproductive

muscular

alimentary

liver

lung

urinary

endo/exo-crine

EST

uterus:-

placenta:-

prostate:-

ovary:-

testis:-

heart:-

muscle:-

esophagus:-

stomach:106.20

intestine:-

colon:220.50

liver/hepato:31.70

lung:14.70

bladder:-

kidney:-

pituitary:-

thyroid/parathyroid:-

adrenal gland:-

pancreas:17.80

breast:-

salivary:-

GeneChip

uterus:4.06

placenta:4.03

prostate:3.97

ovary:4.34

testis:4.32

heart:4.27

muscle:4.08

esophagus:4.33

stomach:6.31

intestine:4.71

colon:5.78

liver/hepato:4.22

lung:6.40

bladder:-

kidney:4.12

pituitary:3.95

thyroid/parathyroid:3.95

adrenal gland:4.14

pancreas:4.42

breast:4.27

salivary:4.27

CAGE

uterus:0.92

placenta:0.48

prostate:0.62

ovary:0.82

testis:0.86

heart:0.42

muscle:0.13

esophagus:2.61

stomach:-

intestine:1.95

colon:1.59

liver/hepato:1.16

lung:2.92

bladder:2.95

kidney:2.07

pituitary:0

thyroid/parathyroid:0.17

adrenal gland:-

pancreas:0.94

breast:0

salivary:1.15

RNA-seq

uterus:-

placenta:-

prostate:0.60

ovary:0.15

testis:0.42

heart:0.04

muscle:0

esophagus:-

stomach:-

intestine:-

colon:0.29

liver/hepato:0.53

lung:5.26

bladder:-

kidney:0.00

pituitary:-

thyroid/parathyroid:0.00

adrenal gland:1.71

pancreas:-

breast:0.02

salivary:-

IDs

Refseq ID	NM_001130046
Gene ID	6364
Unigene ID	Hs.75498
Probe set ID	205476_at [HG-U133_Plus_2]
Ensembl ID	ENSG00000115009
GTEx ID	ENSG00000115009

Orthologous Gene

Mouse[2]	NM_001159738, NM_016960
Rat [0]

Chromosomal Region

2q36.3 [228,678,558 - 228,682,272]

Search genes near this gene
- Between -5kb and +5kb
- Between -10kb and +10kb

Gene Family (Interpro ID)

IPR001089	Small chemokine, C-X-C
IPR002473	Small chemokine, C-X-C/Interleukin 8
IPR001811	Small chemokine, interleukin-8-like

Gene Ontology (GO ID)

Biological Process

GO:0007267	cell-cell signaling
GO:0042466	chemokinesis
GO:0006935	chemotaxis
GO:0042742	defense response to bacterium
GO:0006955	immune response
GO:0006954	inflammatory response
GO:0007165	signal transduction

Cellular Component

GO:0005576	extracellular region
GO:0005615	extracellular space

Molecular Function

GO:0008009

chemokine activity

chemokine (C-C motif) ligand 20

Synonym

Expression Pattern

Choropleth map on BodyParts3D

Classification in 40 Organs

Gene Information

IDs

Orthologous Gene

Chromosomal Region

Gene Family (Interpro ID)

Link to Pubmed (Pubmed ID)

Gene Ontology (GO ID)

Biological Process

Cellular Component

Molecular Function