protocadherin 20

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Synonym

protocadherin 20, Protocadherin-20 precursor, Protocadherin-13, FLJ22218, PCDH20, PCDH13

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST cerebrum:26.10 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:5.90 artery/aorta:60 vein:- lymphnode:- peripheral blood:- spleen:- thymus:25.80 bone marrow:- adipose:- bone:12.80 skin:-
GeneChip nodata
CAGE cerebrum:1.86 cerebellum:- brain stem:1.86 corpus callosum/glia:0.88 pineal gland:1.62 peripheral nerve:- spine:2.03 retina:- eye:- artery/aorta:2.62 vein:1.10 lymphnode:0.15 peripheral blood:- spleen:0.95 thymus:0.23 bone marrow:- adipose:0.26 bone:- skin:-
RNA-seq cerebrum:1.94 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:0.34 peripheral blood:- spleen:- thymus:- bone marrow:- adipose:0.15 bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST uterus:36.50 placenta:- prostate:11.30 ovary:- testis:4.30 heart:51.10 muscle:- esophagus:- stomach:- intestine:- colon:17     liver/hepato:10.60        lung:9.80    bladder:- kidney:10.40 pituitary:- thyroid/parathyroid:- adrenal gland:- pancreas:8.90 breast:- salivary:-
GeneChip nodata
CAGE uterus:1.64 placenta:1.39 prostate:1.42 ovary:0.82 testis:0.86 heart:1.97 muscle:0.27 esophagus:1.64 stomach:- intestine:1.24 colon:1.45     liver/hepato:1.47    lung:1.22 bladder:1.27 kidney:0.67 pituitary:0.90 thyroid/parathyroid:0.23 adrenal gland:- pancreas:0.58 breast:0 salivary:0.62
RNA-seq uterus:- placenta:- prostate:1.56 ovary:0.15 testis:0.81 heart:0.75 muscle:0.42 esophagus:- stomach:- intestine:- colon:1.33     liver/hepato:1.11        lung:1.32    bladder:- kidney:0.82 pituitary:- thyroid/parathyroid:0.63 adrenal gland:0.68 pancreas:- breast:0.20 salivary:-

Gene Information

IDs

Refseq ID NM_022843
Gene ID 64881
Unigene ID Hs.391781
Probe set ID -
Ensembl ID ENSG00000197991
GTEx ID ENSG00000197991

Orthologous Gene

Mouse[2]  NM_178685
Rat[1]  NM_001107280

Chromosomal Region

13q21.2  [61,983,991  -  62,002,220]

Gene Family (Interpro ID)

IPR002126  Cadherin
IPR015919  Cadherin-like

Link to Pubmed  (Pubmed ID)

8012384
8889549
10716726
10817752
10835267
11082270
12477932
14702039
15489334
20834067
21875946
21907864
22359512
23212062

Gene Ontology  (GO ID)

Biological Process

GO:0007156  homophilic cell adhesion

Cellular Component

GO:0016021  integral to membrane
GO:0005886  plasma membrane

Molecular Function

GO:0005509  calcium ion binding