TAR (HIV-1) RNA binding protein 1

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Synonym

Tar (HIV-1) RNA binding protein 1, TAR (HIV) RNA-binding protein 1, TRM3, TARBP1, TRP-185, FLJ30482, TRP185, Tar (HIV) RNA binding protein 1

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST cerebrum:53.30 cerebellum:25.20 brain stem:- corpus callosum/glia:29.20 pineal gland:- peripheral nerve:- spine:- retina:- eye:23.50 artery/aorta:- vein:- lymphnode:80.90 peripheral blood:36.40 spleen:18.90 thymus:12.90 bone marrow:39.40 adipose:40.30 bone:25.60 skin:28.80
GeneChip cerebrum:7.23 cerebellum:7.75 brain stem:6.81 corpus callosum/glia:7.21 pineal gland:- peripheral nerve:6.82 spine:7.11 retina:- eye:- artery/aorta:6.64 vein:6.34 lymphnode:7.70 peripheral blood:- spleen:7.38 thymus:7.08 bone marrow:6.95 adipose:7.22 bone:- skin:7.26
CAGE cerebrum:2.97 cerebellum:- brain stem:2.71 corpus callosum/glia:2.80 pineal gland:2.94 peripheral nerve:- spine:2.37 retina:- eye:- artery/aorta:1.94 vein:2.70 lymphnode:2.70 peripheral blood:- spleen:2.15 thymus:2.48 bone marrow:- adipose:1.88 bone:- skin:-
RNA-seq cerebrum:1.64 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:2.08 peripheral blood:- spleen:- thymus:- bone marrow:- adipose:1.04 bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST uterus:36.50 placenta:18.20 prostate:11.30 ovary:- testis:51.90 heart:25.50 muscle:- esophagus:- stomach:148.70 intestine:32.40 colon:59.40     liver/hepato:31.70        lung:63.50    bladder:251.20 kidney:20.80 pituitary:- thyroid/parathyroid:163.70 adrenal gland:203.10 pancreas:- breast:74.30 salivary:-
GeneChip uterus:7.05 placenta:7.73 prostate:7.59 ovary:6.91 testis:6.89 heart:6.50 muscle:6.99 esophagus:7.33 stomach:7.27 intestine:7.23 colon:6.80 liver/hepato:6.87 lung:6.96 bladder:- kidney:6.80 pituitary:7.59 thyroid/parathyroid:7.21 adrenal gland:6.74 pancreas:7.09 breast:7.44 salivary:7.47
CAGE uterus:2.38 placenta:2.07 prostate:2.11 ovary:1.81 testis:1.87 heart:2.00 muscle:1.90 esophagus:2.35 stomach:- intestine:1.98 colon:2.55     liver/hepato:1.21    lung:2.38 bladder:1.49 kidney:1.94 pituitary:2.55 thyroid/parathyroid:1.88 adrenal gland:- pancreas:2.41 breast:1.53 salivary:3.08
RNA-seq uterus:- placenta:- prostate:1.81 ovary:1.88 testis:2.06 heart:1.39 muscle:1.39 esophagus:- stomach:- intestine:- colon:1.46     liver/hepato:1.07        lung:1.40    bladder:- kidney:1.98 pituitary:- thyroid/parathyroid:1.63 adrenal gland:2.22 pancreas:- breast:2.05 salivary:-

Gene Information

IDs

Refseq ID NM_005646
Gene ID 6894
Unigene ID Hs.498115
Probe set ID 202813_at  [HG-U133_Plus_2]
Ensembl ID ENSG00000059588
GTEx ID ENSG00000059588

Orthologous Gene

Mouse[1]  NM_001159907
Rat[1]  NM_001159907

Chromosomal Region

1q42.2  [234,527,059  -  234,614,849]

Gene Family (Interpro ID)

-

Link to Pubmed  (Pubmed ID)

1752441
1936997
7638159
8626763
8846792
12458222
12477932
14559993
14702039
16710414
17360756
17903297
18051367
18412263
19422693
19615732
20379614
21139048
21294215
21890473
21963094
22025453
24250222

Gene Ontology  (GO ID)

Biological Process

GO:0006357  regulation of transcription from RNA polymerase II promoter
GO:0006396  RNA processing

Cellular Component

GO:0005634  nucleus

Molecular Function

GO:0003723  RNA binding
GO:0008173  RNA methyltransferase activity