U2 small nuclear RNA auxiliary factor 1

Synonym

RN, U2 snRNP auxiliary factor small subunit, DKFZp313J1712, Splicing factor U2AF 35 kDa subunit, U2AFBP, U2 auxiliary factor 35 kDa subunit, U2AF35, U2AF1, RNU2AF1, FP793, U2(RNU2) small nuclear RNA auxiliary factor 1, U2 small nuclear RNA auxiliary factor 1

normal 40 tissues
cell lines, primary cells, adult tissues and fetal tissues (FANTOM5 CAGE)

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain

blood

connective

EST

cerebrum:39.10

cerebellum:25.20

brain stem:-

corpus callosum/glia:-

pineal gland:-

peripheral nerve:30.70

spine:112.30

retina:118.60

eye:88.20

artery/aorta:30

vein:-

lymphnode:131.40

peripheral blood:18.20

spleen:151.30

thymus:154.60

bone marrow:98.40

adipose:40.30

bone:12.80

skin:19.20

GeneChip

cerebrum:9.28

cerebellum:9.63

brain stem:9.23

corpus callosum/glia:9.55

pineal gland:-

peripheral nerve:9.37

spine:9.36

retina:-

eye:-

artery/aorta:9.67

vein:9.71

lymphnode:9.60

peripheral blood:-

spleen:9.97

thymus:10.41

bone marrow:9.84

adipose:9.41

bone:-

skin:9.68

CAGE

cerebrum:4.24

cerebellum:-

brain stem:4.31

corpus callosum/glia:4.38

pineal gland:4.13

peripheral nerve:-

spine:4.30

retina:-

eye:-

artery/aorta:4.46

vein:4.49

lymphnode:4.35

peripheral blood:-

spleen:4.45

thymus:4.74

bone marrow:-

adipose:4.39

bone:-

skin:-

RNA-seq

cerebrum:5.22

cerebellum:-

brain stem:-

corpus callosum/glia:-

pineal gland:-

peripheral nerve:-

spine:-

retina:-

eye:-

artery/aorta:-

vein:-

lymphnode:4.38

peripheral blood:-

spleen:-

thymus:-

bone marrow:-

adipose:5.84

bone:-

skin:-

reproductive

muscular

alimentary

liver

lung

urinary

endo/exo-crine

EST

uterus:91.10

placenta:25.50

prostate:180.20

ovary:37.30

testis:21.60

heart:76.60

muscle:-

esophagus:-

stomach:21.20

intestine:-

colon:76.30

liver/hepato:31.70

lung:53.80

bladder:125.60

kidney:31.20

pituitary:116

thyroid/parathyroid:-

adrenal gland:-

pancreas:80

breast:74.30

salivary:328.40

GeneChip

uterus:9.95

placenta:9.59

prostate:9.93

ovary:10.20

testis:10.21

heart:9.19

muscle:8.57

esophagus:9.78

stomach:9.65

intestine:9.48

colon:9.73

liver/hepato:9.28

lung:9.71

bladder:-

kidney:9.50

pituitary:9.86

thyroid/parathyroid:10.09

adrenal gland:9.56

pancreas:9.40

breast:9.85

salivary:9.38

CAGE

uterus:4.52

placenta:4.50

prostate:4.41

ovary:4.63

testis:4.57

heart:4.36

muscle:4.45

esophagus:4.15

stomach:-

intestine:4.33

colon:4.35

liver/hepato:4.19

lung:4.23

bladder:4.64

kidney:4.26

pituitary:4.74

thyroid/parathyroid:4.76

adrenal gland:-

pancreas:4.51

breast:4.14

salivary:4.57

RNA-seq

uterus:-

placenta:-

prostate:5.04

ovary:6.06

testis:5.64

heart:3.71

muscle:4.09

esophagus:-

stomach:-

intestine:-

colon:5.21

liver/hepato:4.26

lung:4.56

bladder:-

kidney:5.01

pituitary:-

thyroid/parathyroid:6.69

adrenal gland:6.51

pancreas:-

breast:5.16

salivary:-

IDs

Refseq ID	NM_006758
Gene ID	7307
Unigene ID	Hs.365116
Probe set ID	202858_at [HG-U133_Plus_2]
Ensembl ID	ENSG00000160201
GTEx ID	ENSG00000160201

Orthologous Gene

Mouse[4]	NM_001163769, NM_024187
Rat[4]	NM_001163769, NM_024187

Chromosomal Region

21q22.3 [44,513,066 - 44,527,697]

Search genes near this gene
- Between -5kb and +5kb
- Between -10kb and +10kb

Gene Family (Interpro ID)

IPR000504	RNA recognition motif, RNP-1
IPR003954	RNA recognition, domain 1

GO:0010467	gene expression
GO:0031124	mRNA 3'-end processing
GO:0006406	mRNA export from nucleus
GO:0006397	mRNA processing
GO:0000398	nuclear mRNA splicing, via spliceosome
GO:0008380	RNA splicing
GO:0006369	termination of RNA polymerase II transcription
GO:0006366	transcription from RNA polymerase II promoter

GO:0015030	Cajal body
GO:0071013	catalytic step 2 spliceosome
GO:0016607	nuclear speck
GO:0005730	nucleolus
GO:0005654	nucleoplasm
GO:0005634	nucleus
GO:0005681	spliceosomal complex

GO:0046872	metal ion binding
GO:0000166	nucleotide binding
GO:0005515	protein binding
GO:0003723	RNA binding
GO:0050733	RS domain binding

U2 small nuclear RNA auxiliary factor 1

Synonym

Expression Pattern

Choropleth map on BodyParts3D

Classification in 40 Organs

Gene Information

IDs

Orthologous Gene

Chromosomal Region

Gene Family (Interpro ID)

Link to Pubmed (Pubmed ID)

Gene Ontology (GO ID)

Biological Process

Cellular Component

Molecular Function