collagen, type XVIII, alpha 1

Synonym

collagen XVIII, MGC74745, COL18A1, collagen, type XVIII, alpha 1, Collagen alpha-1(XVIII) chain precursor, KNO, ColXVIII, FLJ27325

normal 40 tissues
cell lines, primary cells, adult tissues and fetal tissues (FANTOM5 CAGE)

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain

blood

connective

EST

cerebrum:24.90

cerebellum:-

brain stem:-

corpus callosum/glia:29.20

pineal gland:-

peripheral nerve:276

spine:449.20

retina:118.60

eye:176.30

artery/aorta:-

vein:-

lymphnode:40.40

peripheral blood:54.70

spleen:37.80

thymus:-

bone marrow:59

adipose:161.30

bone:51.20

skin:33.60

GeneChip

cerebrum:5.77

cerebellum:5.59

brain stem:6.14

corpus callosum/glia:6.96

pineal gland:-

peripheral nerve:7.37

spine:7.27

retina:-

eye:-

artery/aorta:8.60

vein:7.47

lymphnode:6.93

peripheral blood:-

spleen:7.20

thymus:5.96

bone marrow:6.25

adipose:7.51

bone:-

skin:6.75

CAGE

cerebrum:3.21

cerebellum:-

brain stem:4.78

corpus callosum/glia:4.90

pineal gland:2.41

peripheral nerve:-

spine:5.23

retina:-

eye:-

artery/aorta:5.82

vein:4.21

lymphnode:3.57

peripheral blood:-

spleen:3.97

thymus:2.34

bone marrow:-

adipose:4.10

bone:-

skin:-

RNA-seq

cerebrum:1.48

cerebellum:-

brain stem:-

corpus callosum/glia:-

pineal gland:-

peripheral nerve:-

spine:-

retina:-

eye:-

artery/aorta:-

vein:-

lymphnode:0.98

peripheral blood:-

spleen:-

thymus:-

bone marrow:-

adipose:1.86

bone:-

skin:-

reproductive

muscular

alimentary

liver

lung

urinary

endo/exo-crine

EST

uterus:173.20

placenta:76.50

prostate:45.10

ovary:-

testis:60.60

heart:140.50

muscle:40.20

esophagus:-

stomach:-

intestine:97.20

colon:50.90

liver/hepato:52.80

lung:53.80

bladder:-

kidney:104

pituitary:-

thyroid/parathyroid:-

adrenal gland:50.80

pancreas:26.70

breast:65.10

salivary:-

GeneChip

uterus:7.32

placenta:6.56

prostate:6.12

ovary:7.43

testis:6.22

heart:6.93

muscle:5.66

esophagus:6.54

stomach:6.82

intestine:7.29

colon:6.72

liver/hepato:9.64

lung:6.93

bladder:-

kidney:8.22

pituitary:7.24

thyroid/parathyroid:7.44

adrenal gland:7.40

pancreas:7.23

breast:7.49

salivary:5.87

CAGE

uterus:4.84

placenta:3.90

prostate:4.29

ovary:4.90

testis:3.91

heart:4.60

muscle:3.62

esophagus:4.11

stomach:-

intestine:3.55

colon:4.08

liver/hepato:7.06

lung:3.95

bladder:4.99

kidney:4.68

pituitary:3.50

thyroid/parathyroid:4.25

adrenal gland:-

pancreas:3.96

breast:4.52

salivary:3.22

RNA-seq

uterus:-

placenta:-

prostate:2.41

ovary:1.43

testis:2.43

heart:0.70

muscle:0.16

esophagus:-

stomach:-

intestine:-

colon:1.51

liver/hepato:4.96

lung:0.98

bladder:-

kidney:1.13

pituitary:-

thyroid/parathyroid:1.34

adrenal gland:1.60

pancreas:-

breast:1.45

salivary:-

IDs

Refseq ID	NM_030582
Gene ID	80781
Unigene ID	Hs.517356
Probe set ID	209081_s_at [HG-U133_Plus_2]
Ensembl ID	ENSG00000182871
GTEx ID	ENSG00000182871

Orthologous Gene

Mouse[4]	NM_001109991, NM_009929
Rat [0]

Chromosomal Region

21q22.3 [46,825,052 - 46,933,634]

Search genes near this gene
- Between -5kb and +5kb
- Between -10kb and +10kb

Gene Family (Interpro ID)

IPR020067

Frizzled-like domain

Gene Ontology (GO ID)

Biological Process

GO:0001525	angiogenesis
GO:0007155	cell adhesion
GO:0030574	collagen catabolic process
GO:0001886	endothelial cell morphogenesis
GO:0022617	extracellular matrix disassembly
GO:0030198	extracellular matrix organization
GO:0008285	negative regulation of cell proliferation
GO:0009887	organ morphogenesis
GO:0043065	positive regulation of apoptosis
GO:0030335	positive regulation of cell migration
GO:0008284	positive regulation of cell proliferation
GO:0007601	visual perception

Cellular Component

GO:0005604	basement membrane
GO:0005581	collagen
GO:0005788	endoplasmic reticulum lumen
GO:0031012	extracellular matrix
GO:0005576	extracellular region
GO:0005615	extracellular space

Molecular Function

GO:0042802	identical protein binding
GO:0046872	metal ion binding
GO:0005515	protein binding
GO:0005198	structural molecule activity

collagen, type XVIII, alpha 1

Synonym

Expression Pattern

Choropleth map on BodyParts3D

Classification in 40 Organs

Gene Information

IDs

Orthologous Gene

Chromosomal Region

Gene Family (Interpro ID)

Link to Pubmed (Pubmed ID)

Gene Ontology (GO ID)

Biological Process

Cellular Component

Molecular Function