protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1

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Synonym

MGC26800, LAR-interacting protein 1, PTPRF-interacting protein alpha-1, LIP.1, Liprin-alpha-1, LIPRIN, PPFIA1

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST cerebrum:48.60 cerebellum:88.20 brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:30.70 spine:112.30 retina:- eye:88.20 artery/aorta:- vein:66.60 lymphnode:111.20 peripheral blood:36.40 spleen:37.80 thymus:103.10 bone marrow:39.40 adipose:121 bone:38.40 skin:312
GeneChip cerebrum:6.44 cerebellum:6.21 brain stem:6.40 corpus callosum/glia:6.72 pineal gland:- peripheral nerve:6.28 spine:6.71 retina:- eye:- artery/aorta:6.54 vein:6.60 lymphnode:6.37 peripheral blood:- spleen:6.45 thymus:6.47 bone marrow:6.60 adipose:6.44 bone:- skin:6.43
CAGE cerebrum:3.76 cerebellum:- brain stem:3.66 corpus callosum/glia:4.01 pineal gland:3.73 peripheral nerve:- spine:4.22 retina:- eye:- artery/aorta:3.65 vein:3.50 lymphnode:3.35 peripheral blood:- spleen:3.29 thymus:3.37 bone marrow:- adipose:3.62 bone:- skin:-
RNA-seq cerebrum:0.71 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:0.20 peripheral blood:- spleen:- thymus:- bone marrow:- adipose:0.67 bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST uterus:109.40 placenta:91.10 prostate:33.80 ovary:- testis:155.80 heart:38.30 muscle:- esophagus:- stomach:191.20 intestine:64.80 colon:195     liver/hepato:42.20        lung:48.90    bladder:- kidney:- pituitary:116 thyroid/parathyroid:- adrenal gland:- pancreas:- breast:185.90 salivary:-
GeneChip uterus:6.29 placenta:6.31 prostate:6.43 ovary:6.38 testis:7.42 heart:6.13 muscle:6.60 esophagus:6.27 stomach:6.14 intestine:6.21 colon:6.42 liver/hepato:6.36 lung:6.70 bladder:- kidney:6.40 pituitary:6.26 thyroid/parathyroid:6.28 adrenal gland:6.46 pancreas:6.20 breast:6.45 salivary:5.87
CAGE uterus:3.44 placenta:3.82 prostate:3.38 ovary:3.33 testis:4.00 heart:3.52 muscle:3.57 esophagus:3.24 stomach:- intestine:3.55 colon:3.68     liver/hepato:3.24    lung:3.75 bladder:3.42 kidney:3.57 pituitary:4.12 thyroid/parathyroid:3.42 adrenal gland:- pancreas:3.23 breast:4.41 salivary:2.90
RNA-seq uterus:- placenta:- prostate:0.25 ovary:0.43 testis:2.64 heart:0.02 muscle:0.00 esophagus:- stomach:- intestine:- colon:0.04     liver/hepato:0.10        lung:0.16    bladder:- kidney:0.16 pituitary:- thyroid/parathyroid:0.52 adrenal gland:0.15 pancreas:- breast:0.21 salivary:-

Gene Information

IDs

Refseq ID NM_177423
Gene ID 8500
Unigene ID Hs.530749
Probe set ID 202065_s_at  [HG-U133_Plus_2]
Ensembl ID ENSG00000131626
GTEx ID ENSG00000131626

Orthologous Gene

Mouse[1]  NM_001033319, NM_001195086
Rat[1]  NM_001106320, NM_001195086

Chromosomal Region

11q13.3  [70,116,806  -  70,230,509]

Gene Family (Interpro ID)

IPR001660  Sterile alpha motif
IPR010993  Sterile alpha motif homology
IPR013761  Sterile alpha motif-type

Link to Pubmed  (Pubmed ID)

7796809
8524829
9624153
10737800
11931740
12477932
12629171
12923177
14702039
15324660
15489334
16189514
16313174
16713569
16973615
17081983
17363573
17419996
18196592
18782753
19060904
19156129
19690048
19787783
20096687
21139048
21145461
21157931
22072677
22295056
22505724
22863883
24255178
24778252
24816145

Gene Ontology  (GO ID)

Biological Process

GO:0007160  cell-matrix adhesion
GO:0007165  signal transduction

Cellular Component

GO:0005737  cytoplasm

Molecular Function

GO:0005515  protein binding
GO:0004871  signal transducer activity