agrin

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Synonym

agrin, Agrn, Agrin

normal 40 tissues
developmental tissues and primary cells（FANTOM5 CAGE）

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain

blood

connective

EST

cerebrum:434.20

cerebellum:184.20

brain stem:190.70

corpus callosum/glia:-

pineal gland:-

peripheral nerve:152.90

spine:-

retina:353.60

eye:235.50

artery/aorta:-

vein:-

lymphnode:43.20

peripheral blood:-

spleen:39.50

thymus:49.40

bone marrow:-

adipose:-

bone:150.30

skin:110.80

GeneChip

cerebrum:9.65

cerebellum:8.31

brain stem:-

corpus callosum/glia:-

pineal gland:-

peripheral nerve:8.84

spine:9.49

retina:8.06

eye:8.39

artery/aorta:-

vein:9.69

lymphnode:7.82

peripheral blood:-

spleen:7.66

thymus:-

bone marrow:7.67

adipose:8.56

bone:7.45

skin:10.36

CAGE

cerebrum:3.24

cerebellum:-

brain stem:3.55

corpus callosum/glia:-

pineal gland:-

peripheral nerve:-

spine:3.41

retina:-

eye:-

artery/aorta:2.76

vein:-

lymphnode:1.35

peripheral blood:-

spleen:2.29

thymus:1.69

bone marrow:-

adipose:-

bone:1.51

skin:3.90

RNA-seq

cerebrum:8.86

cerebellum:-

brain stem:-

corpus callosum/glia:-

pineal gland:-

peripheral nerve:-

spine:-

retina:-

eye:-

artery/aorta:-

vein:-

lymphnode:-

peripheral blood:-

spleen:-

thymus:-

bone marrow:-

adipose:-

bone:-

skin:-

reproductive

muscular

alimentary

liver

lung

urinary

endo/exo-crine

EST

uterus:218.10

placenta:276.10

prostate:61.80

ovary:46

testis:103.50

heart:37.20

muscle:-

esophagus:-

stomach:-

intestine:-

colon:70.50

liver/hepato:18.10

lung:231

bladder:66.20

kidney:80.60

pituitary:-

thyroid/parathyroid:112.50

adrenal gland:-

pancreas:46.90

breast:160

salivary:-

GeneChip

uterus:9.92

placenta:9.22

prostate:9.07

ovary:9.25

testis:6.06

heart:8.76

muscle:7.41

esophagus:-

stomach:8.57

intestine:8.87

colon:-

liver/hepato:8.12

lung:10.64

bladder:9.49

kidney:9.44

pituitary:8.49

thyroid/parathyroid:-

adrenal gland:8.61

pancreas:8.74

breast:8.91

salivary:9.03

CAGE

uterus:3.44

placenta:3.14

prostate:2.88

ovary:2.92

testis:0.75

heart:-

muscle:-

esophagus:-

stomach:2.44

intestine:3.97

colon:3.49

liver/hepato:2.78

lung:3.89

bladder:3.34

kidney:-

pituitary:2.81

thyroid/parathyroid:-

adrenal gland:2.65

pancreas:3.04

breast:3.13

salivary:-

RNA-seq

uterus:-

placenta:-

prostate:-

ovary:-

testis:-

heart:-

muscle:1.89

esophagus:-

stomach:-

intestine:-

colon:-

liver/hepato:3.08

lung:-

bladder:-

kidney:-

pituitary:-

thyroid/parathyroid:-

adrenal gland:-

pancreas:-

breast:-

salivary:-

IDs

Refseq ID	NM_021604
Gene ID	11603
Unigene ID	Mm.273098
Probe set ID	1426670_at [Mouse430_2]
Ensembl ID	ENSMUSG00000041936

Orthologous Gene

Human[3]	NM_198576
Rat[1]	NM_175754

Chromosomal Region

Gene Family (Interpro ID)

IPR004850	Agrin NtA
IPR008985	Concanavalin A-like lectin/glucanase
IPR013320	Concanavalin A-like lectin/glucanase, subgroup
IPR001881	EGF-like calcium-binding
IPR000742	EGF-like, type 3
IPR003645	Follistatin-like, N-terminal
IPR001791	Laminin G
IPR002350	Proteinase inhibitor I1, Kazal
IPR008993	TIMP-like, OB-fold

Gene Ontology (GO ID)

Biological Process

GO:0030154	cell differentiation
GO:0007275	multicellular organismal development
GO:0007528	neuromuscular junction development
GO:0045213	neurotransmitter receptor metabolic process
GO:0007009	plasma membrane organization
GO:0051491	positive regulation of filopodium assembly
GO:0043525	positive regulation of neuron apoptosis
GO:0001934	positive regulation of protein amino acid phosphorylation
GO:0032321	positive regulation of Rho GTPase activity
GO:0045887	positive regulation of synaptic growth at neuromuscular junction
GO:0045944	positive regulation of transcription from RNA polymerase II promoter
GO:0043113	receptor clustering
GO:0001932	regulation of protein amino acid phosphorylation
GO:0032314	regulation of Rac GTPase activity
GO:0010469	regulation of receptor activity
GO:0008582	regulation of synaptic growth at neuromuscular junction
GO:0007416	synapse assembly
GO:0007268	synaptic transmission

Cellular Component

GO:0005605	basal lamina
GO:0005604	basement membrane
GO:0030054	cell junction
GO:0009986	cell surface
GO:0031012	extracellular matrix
GO:0005615	extracellular space
GO:0016021	integral to membrane
GO:0016020	membrane
GO:0005886	plasma membrane
GO:0045202	synapse

Molecular Function

GO:0030548	acetylcholine receptor regulator activity
GO:0005509	calcium ion binding
GO:0043395	heparan sulfate proteoglycan binding

agrin

Synonym

Expression Pattern

Choropleth map on BodyParts3D

Classification in 40 Organs

Gene Information

IDs

Orthologous Gene

Chromosomal Region

Gene Family (Interpro ID)

Link to Pubmed (Pubmed ID)

Gene Ontology (GO ID)

Biological Process

Cellular Component

Molecular Function