homeobox A1

Synonym

Hoxa-1, homeo box A1, Homeoboxless protein ERA-1-399, Homeobox protein Hox-A1, Era-1, ERA1, Hox-1.6, Hoxa1, Homeotic protein ERA-1-993, Early retinoic acid 1, early retinoic acid

normal 40 tissues
developmental tissues and primary cells（FANTOM5 CAGE）

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain

blood

connective

EST

cerebrum:12.20

cerebellum:18.40

brain stem:95.30

corpus callosum/glia:-

pineal gland:-

peripheral nerve:-

spine:47.30

retina:-

eye:-

artery/aorta:-

vein:-

lymphnode:-

peripheral blood:-

spleen:-

thymus:-

bone marrow:-

adipose:-

bone:-

skin:-

GeneChip

cerebrum:3.83

cerebellum:3.79

brain stem:-

corpus callosum/glia:-

pineal gland:-

peripheral nerve:4.19

spine:4.16

retina:3.83

eye:4.03

artery/aorta:-

vein:5.19

lymphnode:3.87

peripheral blood:-

spleen:3.84

thymus:-

bone marrow:4.01

adipose:4.79

bone:4.34

skin:4.95

CAGE

cerebrum:0

cerebellum:-

brain stem:0.23

corpus callosum/glia:-

pineal gland:-

peripheral nerve:-

spine:0.17

retina:-

eye:-

artery/aorta:0.62

vein:-

lymphnode:0.23

peripheral blood:-

spleen:0

thymus:0

bone marrow:-

adipose:-

bone:0

skin:0.77

RNA-seq

cerebrum:0.54

cerebellum:0.54

brain stem:0.54

corpus callosum/glia:0.54

pineal gland:0.54

peripheral nerve:0.54

spine:0.54

retina:0.54

eye:0.54

artery/aorta:-

vein:-

lymphnode:-

peripheral blood:-

spleen:-

thymus:-

bone marrow:-

adipose:-

bone:-

skin:-

reproductive

muscular

alimentary

liver

lung

urinary

endo/exo-crine

EST

uterus:-

placenta:-

prostate:-

ovary:-

testis:-

heart:-

muscle:-

esophagus:-

stomach:32.70

intestine:-

colon:-

liver/hepato:-

lung:-

bladder:-

kidney:-

pituitary:-

thyroid/parathyroid:-

adrenal gland:-

pancreas:-

breast:-

salivary:-

GeneChip

uterus:3.91

placenta:6.07

prostate:3.81

ovary:3.96

testis:3.81

heart:4.24

muscle:4.04

esophagus:-

stomach:3.87

intestine:4.02

colon:-

liver/hepato:4.14

lung:4.61

bladder:3.89

kidney:4.39

pituitary:3.73

thyroid/parathyroid:-

adrenal gland:4.18

pancreas:4.46

breast:4.12

salivary:4.12

CAGE

uterus:0

placenta:0.60

prostate:0

ovary:0

testis:0

heart:-

muscle:-

esophagus:-

stomach:0

intestine:0

colon:0

liver/hepato:0.26

lung:0.31

bladder:0

kidney:-

pituitary:0

thyroid/parathyroid:-

adrenal gland:0

pancreas:0

breast:0

salivary:-

RNA-seq

uterus:-

placenta:-

prostate:-

ovary:-

testis:-

heart:-

muscle:-

esophagus:-

stomach:-

intestine:-

colon:-

liver/hepato:-

lung:-

bladder:-

kidney:-

pituitary:-

thyroid/parathyroid:-

adrenal gland:-

pancreas:-

breast:-

salivary:-

IDs

Refseq ID	NM_010449
Gene ID	15394
Unigene ID	Mm.197051
Probe set ID	1420565_at [Mouse430_2]
Ensembl ID	ENSMUSG00000029844

Orthologous Gene

Human[2]	NM_005522, NM_153620
Rat [0]

Chromosomal Region

Gene Family (Interpro ID)

IPR001356	Homeobox
IPR009057	Homeodomain-like
IPR012287	Homeodomain-related

Gene Ontology (GO ID)

Biological Process

GO:0021599	abducens nerve formation
GO:0048646	anatomical structure formation involved in morphogenesis
GO:0009653	anatomical structure morphogenesis
GO:0009952	anterior/posterior pattern formation
GO:0060840	artery development
GO:0048844	artery morphogenesis
GO:0021953	central nervous system neuron differentiation
GO:0090102	cochlea development
GO:0090103	cochlea morphogenesis
GO:0050890	cognition
GO:0048702	embryonic neurocranium morphogenesis
GO:0021612	facial nerve structural organization
GO:0021754	facial nucleus development
GO:0030902	hindbrain development
GO:0048839	inner ear development
GO:0042472	inner ear morphogenesis
GO:0008045	motor axon guidance
GO:0007275	multicellular organismal development
GO:0007399	nervous system development
GO:0050905	neuromuscular process
GO:0007634	optokinetic behavior
GO:0042473	outer ear morphogenesis
GO:0045944	positive regulation of transcription from RNA polymerase II promoter
GO:0050795	regulation of behavior
GO:0006357	regulation of transcription from RNA polymerase II promoter
GO:0006355	regulation of transcription, DNA-dependent
GO:0021569	rhombomere 3 development
GO:0021570	rhombomere 4 development
GO:0021571	rhombomere 5 development
GO:0060876	semicircular canal formation
GO:0007605	sensory perception of sound
GO:0006351	transcription, DNA-dependent

Cellular Component

GO:0005634

nucleus

Molecular Function

GO:0003677	DNA binding
GO:0005515	protein binding
GO:0043565	sequence-specific DNA binding
GO:0003700	transcription factor activity

homeobox A1

Synonym

Expression Pattern

Choropleth map on BodyParts3D

Classification in 40 Organs

Gene Information

IDs

Orthologous Gene

Chromosomal Region

Gene Family (Interpro ID)

Link to Pubmed (Pubmed ID)

Gene Ontology (GO ID)

Biological Process

Cellular Component

Molecular Function