ubiquitin-like, containing PHD and RING finger domains, 1

jump to detail

Synonym

AL022808, Nuclear protein 95, RNF106, ICBP90, Np95, Uhrf1, Nuclear zinc finger protein Np95

normal 40 tissues
developmental tissues and primary cells（FANTOM5 CAGE）

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain

blood

connective

EST

cerebrum:99

cerebellum:147.40

brain stem:-

corpus callosum/glia:-

pineal gland:-

peripheral nerve:57.30

spine:94.60

retina:128.60

eye:273.50

artery/aorta:-

vein:-

lymphnode:97.20

peripheral blood:172.50

spleen:118.50

thymus:286.50

bone marrow:525.70

adipose:-

bone:200.40

skin:237.50

GeneChip

cerebrum:4.26

cerebellum:4.23

brain stem:-

corpus callosum/glia:-

pineal gland:-

peripheral nerve:4.40

spine:4.30

retina:4.70

eye:5.48

artery/aorta:-

vein:7.75

lymphnode:7.76

peripheral blood:-

spleen:7.74

thymus:-

bone marrow:10.39

adipose:5.70

bone:10.04

skin:6.93

CAGE

cerebrum:0

cerebellum:-

brain stem:0.38

corpus callosum/glia:-

pineal gland:-

peripheral nerve:-

spine:0

retina:-

eye:-

artery/aorta:1.20

vein:-

lymphnode:2.08

peripheral blood:-

spleen:3.96

thymus:4.22

bone marrow:-

adipose:-

bone:3.44

skin:2.17

RNA-seq

cerebrum:0.74

cerebellum:-

brain stem:-

corpus callosum/glia:-

pineal gland:-

peripheral nerve:-

spine:-

retina:-

eye:-

artery/aorta:-

vein:-

lymphnode:-

peripheral blood:-

spleen:-

thymus:-

bone marrow:-

adipose:-

bone:-

skin:-

reproductive

muscular

alimentary

liver

lung

urinary

endo/exo-crine

EST

uterus:43.60

placenta:-

prostate:-

ovary:643.50

testis:303

heart:130.20

muscle:-

esophagus:-

stomach:163.60

intestine:73.90

colon:35.20

liver/hepato:126.70

lung:120.50

bladder:-

kidney:80.60

pituitary:167.90

thyroid/parathyroid:-

adrenal gland:-

pancreas:84.40

breast:150.20

salivary:-

GeneChip

uterus:7.34

placenta:5.50

prostate:4.95

ovary:7.75

testis:9.17

heart:4.87

muscle:5.06

esophagus:-

stomach:7.05

intestine:7.67

colon:-

liver/hepato:4.68

lung:5.39

bladder:4.94

kidney:4.71

pituitary:4.83

thyroid/parathyroid:-

adrenal gland:5.13

pancreas:5.19

breast:6.39

salivary:5.48

CAGE

uterus:2.14

placenta:2.12

prostate:0.74

ovary:2.21

testis:3.75

heart:-

muscle:-

esophagus:-

stomach:1.91

intestine:2.64

colon:2.57

liver/hepato:0.64

lung:1.62

bladder:0.77

kidney:-

pituitary:0.52

thyroid/parathyroid:-

adrenal gland:0.85

pancreas:0

breast:2.33

salivary:-

RNA-seq

uterus:-

placenta:-

prostate:-

ovary:-

testis:-

heart:-

muscle:1.32

esophagus:-

stomach:-

intestine:-

colon:-

liver/hepato:0

lung:-

bladder:-

kidney:-

pituitary:-

thyroid/parathyroid:-

adrenal gland:-

pancreas:-

breast:-

salivary:-

IDs

Refseq ID	NM_010931
Gene ID	18140
Unigene ID	Mm.42196
Probe set ID	1415810_at [Mouse430_2]
Ensembl ID	ENSMUSG00000001228

Orthologous Gene

Human[2]	NM_001048201, NM_013282
Rat[2]	NM_001048201, NM_013282

Chromosomal Region

17D [56,442,744 - 56,462,909]

Search genes near this gene
- Between -5kb and +5kb
- Between -10kb and +10kb

Gene Family (Interpro ID)

IPR000626	Ubiquitin
IPR019956	Ubiquitin subgroup
IPR019955	Ubiquitin supergroup
IPR019787	Zinc finger, PHD-finger
IPR001965	Zinc finger, PHD-type

Link to Pubmed (Pubmed ID)

Gene Ontology (GO ID)

Biological Process

GO:0007049	cell cycle
GO:0008283	cell proliferation
GO:0016568	chromatin modification
GO:0006281	DNA repair
GO:0010390	histone monoubiquitination
GO:0016574	histone ubiquitination
GO:0010216	maintenance of DNA methylation
GO:0000122	negative regulation of transcription from RNA polymerase II promoter
GO:0032270	positive regulation of cellular protein metabolic process
GO:0051865	protein autoubiquitination
GO:0042787	protein ubiquitination during ubiquitin-dependent protein catabolic process
GO:0006355	regulation of transcription, DNA-dependent
GO:0006974	response to DNA damage stimulus
GO:0006351	transcription, DNA-dependent

Cellular Component

GO:0000791	euchromatin
GO:0000792	heterochromatin
GO:0000790	nuclear chromatin
GO:0016363	nuclear matrix
GO:0005634	nucleus
GO:0005657	replication fork

Molecular Function

GO:0003677	DNA binding
GO:0042393	histone binding
GO:0042802	identical protein binding
GO:0016874	ligase activity
GO:0046872	metal ion binding
GO:0008327	methyl-CpG binding
GO:0035064	methylated histone residue binding
GO:0031493	nucleosomal histone binding
GO:0005515	protein binding
GO:0004842	ubiquitin-protein ligase activity
GO:0008270	zinc ion binding

ubiquitin-like, containing PHD and RING finger domains, 1

Synonym

Expression Pattern

Choropleth map on BodyParts3D

Classification in 40 Organs

Gene Information

IDs

Orthologous Gene

Chromosomal Region

Gene Family (Interpro ID)

Link to Pubmed (Pubmed ID)

Gene Ontology (GO ID)

Biological Process

Cellular Component

Molecular Function