RNA binding motif protein, X chromosome

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Synonym

Rbmx, RNA binding motif protein, X chromosome

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST cerebrum:52.10 cerebellum:36.80 brain stem:444.90 corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:94.60 retina:32.10 eye:38 artery/aorta:- vein:- lymphnode:32.40 peripheral blood:14.40 spleen:- thymus:118.60 bone marrow:- adipose:212.70 bone:225.40 skin:118.80
GeneChip cerebrum:6.12 cerebellum:6.15 brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:5.30 spine:5.29 retina:7.21 eye:5.83 artery/aorta:- vein:5.93 lymphnode:6.46 peripheral blood:- spleen:6.31 thymus:- bone marrow:6.04 adipose:5.65 bone:6.41 skin:6.14
CAGE cerebrum:4.40 cerebellum:- brain stem:3.92 corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:3.85 retina:- eye:- artery/aorta:4.11 vein:- lymphnode:4.63 peripheral blood:- spleen:3.51 thymus:5.23 bone marrow:- adipose:- bone:4.02 skin:4.20
RNA-seq cerebrum:3.28 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:- peripheral blood:- spleen:- thymus:- bone marrow:- adipose:- bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST uterus:87.20 placenta:41.40 prostate:- ovary:183.90 testis:303 heart:55.80 muscle:142 esophagus:- stomach:- intestine:- colon:17.60     liver/hepato:-        lung:130.50    bladder:- kidney:8.10 pituitary:38.80 thyroid/parathyroid:- adrenal gland:- pancreas:46.90 breast:124.10 salivary:-
GeneChip uterus:5.90 placenta:5.95 prostate:5 ovary:6.33 testis:4.01 heart:5.35 muscle:5.23 esophagus:- stomach:5.17 intestine:5.36 colon:- liver/hepato:4.93 lung:5.76 bladder:5.50 kidney:5.82 pituitary:6.11 thyroid/parathyroid:- adrenal gland:6.33 pancreas:5.42 breast:5.95 salivary:5.95
CAGE uterus:4.12 placenta:4.22 prostate:3.34 ovary:4.40 testis:2.25 heart:- muscle:- esophagus:- stomach:3.92 intestine:3.96 colon:3.70     liver/hepato:3.11    lung:3.94 bladder:3.75 kidney:- pituitary:4.10 thyroid/parathyroid:- adrenal gland:3.66 pancreas:3.94 breast:3.96 salivary:-
RNA-seq uterus:- placenta:- prostate:- ovary:- testis:- heart:- muscle:2.89 esophagus:- stomach:- intestine:- colon:-     liver/hepato:2.07        lung:-    bladder:- kidney:- pituitary:- thyroid/parathyroid:- adrenal gland:- pancreas:- breast:- salivary:-

Gene Information

IDs

Refseq ID NM_001166623
Gene ID 19655
Unigene ID Mm.282751
Probe set ID 1416355_at  [Mouse430_2]
Ensembl ID ENSMUSG00000031134

Orthologous Gene

Human[4]  NM_001164803, NM_002139
Rat[4]  NM_001164803, NM_002139

Chromosomal Region

XA5  [54,636,707  -  54,646,213]

Gene Family (Interpro ID)

IPR000504  RNA recognition motif, RNP-1
IPR003954  RNA recognition, domain 1

Link to Pubmed  (Pubmed ID)

10349636
10391207
10922068
11042159
11076861
11217851
11544199
12466851
12477932
14762062
15782199
16033648
16141072
16141073
16919269
17188681
17967808
18799693
18973680
19403048
21677750
23665500

Gene Ontology  (GO ID)

Biological Process

GO:0071347  cellular response to interleukin-1
GO:0006509  membrane protein ectodomain proteolysis
GO:0006397  mRNA processing
GO:0006376  mRNA splice site selection
GO:0045944  positive regulation of transcription from RNA polymerase II promoter
GO:0045893  positive regulation of transcription, DNA-dependent
GO:0000381  regulation of alternative nuclear mRNA splicing, via spliceosome
GO:0008380  RNA splicing
GO:0006366  transcription from RNA polymerase II promoter
GO:0006351  transcription, DNA-dependent

Cellular Component

GO:0071013  catalytic step 2 spliceosome
GO:0070062  extracellular vesicular exosome
GO:0005719  nuclear euchromatin
GO:0005634  nucleus
GO:0030529  ribonucleoprotein complex
GO:0005681  spliceosomal complex

Molecular Function

GO:0003682  chromatin binding
GO:0003729  mRNA binding
GO:0003676  nucleic acid binding
GO:0000166  nucleotide binding
GO:0003723  RNA binding
GO:0003727  single-stranded RNA binding