Sjogren syndrome antigen B

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Synonym

MGC118101, Ssb, Sjogren syndrome antigen B, autoantigen La, La autoantigen homolog, Lupus La protein homolog, La ribonucleoprotein, La protein, Ss-b, SS-B

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST cerebrum:132 cerebellum:92.10 brain stem:95.30 corpus callosum/glia:- pineal gland:- peripheral nerve:95.50 spine:- retina:321.40 eye:106.40 artery/aorta:84.40 vein:- lymphnode:32.40 peripheral blood:316.30 spleen:144.80 thymus:128.40 bone marrow:192.30 adipose:- bone:25 skin:102.90
GeneChip cerebrum:7.91 cerebellum:8.03 brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:8.10 spine:7.56 retina:5.46 eye:4.81 artery/aorta:- vein:8.27 lymphnode:8.50 peripheral blood:- spleen:8.17 thymus:- bone marrow:8.73 adipose:7.66 bone:8.24 skin:7.57
CAGE cerebrum:4.83 cerebellum:- brain stem:4.77 corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:4.80 retina:- eye:- artery/aorta:4.89 vein:- lymphnode:5.64 peripheral blood:- spleen:4.86 thymus:5.03 bone marrow:- adipose:- bone:4.78 skin:4.84
RNA-seq cerebrum:5.54 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:- peripheral blood:- spleen:- thymus:- bone marrow:- adipose:- bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST uterus:261.70 placenta:138.10 prostate:247.10 ovary:275.80 testis:133 heart:93 muscle:35.50 esophagus:- stomach:98.20 intestine:110.90 colon:35.20     liver/hepato:27.20        lung:120.50    bladder:132.40 kidney:64.50 pituitary:155 thyroid/parathyroid:- adrenal gland:424.40 pancreas:262.70 breast:117.50 salivary:-
GeneChip uterus:7.92 placenta:8.27 prostate:8.13 ovary:8.43 testis:7.24 heart:7.07 muscle:7.56 esophagus:- stomach:7.45 intestine:7.73 colon:- liver/hepato:7.51 lung:7.78 bladder:8.30 kidney:7.52 pituitary:8.36 thyroid/parathyroid:- adrenal gland:7.97 pancreas:6.77 breast:7.90 salivary:7.30
CAGE uterus:4.88 placenta:4.79 prostate:4.70 ovary:4.90 testis:4.61 heart:- muscle:- esophagus:- stomach:4.87 intestine:4.42 colon:4.34     liver/hepato:4.44    lung:4.77 bladder:4.77 kidney:- pituitary:4.79 thyroid/parathyroid:- adrenal gland:4.72 pancreas:3.97 breast:4.73 salivary:-
RNA-seq uterus:- placenta:- prostate:- ovary:- testis:- heart:- muscle:7.68 esophagus:- stomach:- intestine:- colon:-     liver/hepato:6.77        lung:-    bladder:- kidney:- pituitary:- thyroid/parathyroid:- adrenal gland:- pancreas:- breast:- salivary:-

Gene Information

IDs

Refseq ID NM_001110145
Gene ID 20823
Unigene ID Mm.10508
Probe set ID 1416421_a_at  [Mouse430_2]
Ensembl ID ENSMUSG00000068882

Orthologous Gene

Human[2]  NM_003142
Rat[2]  NM_003142

Chromosomal Region

2C2  [69,699,619  -  69,709,903]

Gene Family (Interpro ID)

IPR000504  RNA recognition motif, RNP-1
IPR006630  RNA-binding protein Lupus La
IPR011991  Winged helix repressor DNA-binding

Link to Pubmed  (Pubmed ID)

8454877
10051620
10349636
10564276
10922068
11042159
11076861
11134326
11217851
11817591
12121436
12466851
12477932
12904583
14610273
15489334
15782199
15895466
16033648
16141072
16141073
16449655
16512683
17875784
17907193
17971306
18799693
18836485
21267068
21343359
22904067
23649778
23665500
24190965
24457600

Gene Ontology  (GO ID)

Biological Process

GO:0006396  RNA processing
GO:0008033  tRNA processing

Cellular Component

GO:0005634  nucleus
GO:0030529  ribonucleoprotein complex

Molecular Function

GO:0003676  nucleic acid binding
GO:0000166  nucleotide binding
GO:0003723  RNA binding