synovial sarcoma translocation, Chromosome 18

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Synonym

D130059H17, Ssxt, Syt, SYT protein, Synovial sarcoma-associated Ss18-alpha, Ss18, synovial sarcoma translocation, Chromosome 18, SSXT protein

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST cerebrum:93.80 cerebellum:239.50 brain stem:158.90 corpus callosum/glia:- pineal gland:257.80 peripheral nerve:191.10 spine:141.90 retina:128.60 eye:114 artery/aorta:253.20 vein:- lymphnode:32.40 peripheral blood:647 spleen:39.50 thymus:158.10 bone marrow:64.10 adipose:- bone:100.20 skin:142.50
GeneChip cerebrum:8.54 cerebellum:9.32 brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:8.49 spine:8.56 retina:9.45 eye:9.49 artery/aorta:- vein:9.97 lymphnode:10.41 peripheral blood:- spleen:10.44 thymus:- bone marrow:9.76 adipose:9.78 bone:9.79 skin:11.12
CAGE cerebrum:3.73 cerebellum:- brain stem:3.38 corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:3.40 retina:- eye:- artery/aorta:4.22 vein:- lymphnode:4.95 peripheral blood:- spleen:3.93 thymus:4.39 bone marrow:- adipose:- bone:3.83 skin:4.29
RNA-seq cerebrum:2.50 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:- peripheral blood:- spleen:- thymus:- bone marrow:- adipose:- bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST uterus:174.50 placenta:41.40 prostate:30.90 ovary:367.70 testis:177.40 heart:130.20 muscle:- esophagus:- stomach:- intestine:- colon:-     liver/hepato:27.20        lung:381.60    bladder:529.50 kidney:48.40 pituitary:90.40 thyroid/parathyroid:112.50 adrenal gland:- pancreas:103.20 breast:241.60 salivary:-
GeneChip uterus:10.26 placenta:9.80 prostate:9.94 ovary:10.87 testis:9.01 heart:9.18 muscle:8.95 esophagus:- stomach:9.72 intestine:9.95 colon:- liver/hepato:9.27 lung:10.68 bladder:10.52 kidney:9.28 pituitary:10.22 thyroid/parathyroid:- adrenal gland:10.37 pancreas:8.66 breast:9.86 salivary:10.05
CAGE uterus:4.13 placenta:4.05 prostate:3.93 ovary:4.50 testis:4.54 heart:- muscle:- esophagus:- stomach:4.01 intestine:3.54 colon:3.76     liver/hepato:3.81    lung:4.36 bladder:4.20 kidney:- pituitary:3.97 thyroid/parathyroid:- adrenal gland:4.48 pancreas:3.64 breast:4.40 salivary:-
RNA-seq uterus:- placenta:- prostate:- ovary:- testis:- heart:- muscle:1.92 esophagus:- stomach:- intestine:- colon:-     liver/hepato:3.95        lung:-    bladder:- kidney:- pituitary:- thyroid/parathyroid:- adrenal gland:- pancreas:- breast:- salivary:-

Gene Information

IDs

Refseq ID NM_009280
Gene ID 268996
Unigene ID Mm.31761
Probe set ID 1419360_a_at  [Mouse430_2]
Ensembl ID ENSMUSG00000037013

Orthologous Gene

Human[8]  NM_001007559, NM_005637
Rat[1]  NM_001100900, NM_005637

Chromosomal Region

18A1  [14,782,707  -  14,841,423]

Gene Family (Interpro ID)

-

Link to Pubmed  (Pubmed ID)

1521591
8760306
10349636
10725249
10922068
11042159
11076861
11217851
11435705
12466851
12477932
12520002
12904583
14595844
14610273
15782199
16141072
16141073
16926188
17686994
18799693
19333234
20007774
21267068
21677750
22439931
23540691
23785148

Gene Ontology  (GO ID)

Biological Process

GO:0000902  cell morphogenesis
GO:0007010  cytoskeleton organization
GO:0048013  ephrin receptor signaling pathway
GO:0000226  microtubule cytoskeleton organization
GO:0045944  positive regulation of transcription from RNA polymerase II promoter
GO:0007243  protein kinase cascade
GO:0006355  regulation of transcription, DNA-dependent
GO:0042493  response to drug
GO:0006351  transcription, DNA-dependent

Cellular Component

GO:0005881  cytoplasmic microtubule
GO:0005634  nucleus

Molecular Function

GO:0030374  ligand-dependent nuclear receptor transcription coactivator activity