protocadherin 7

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Synonym

Pcdh7, BH-protocadherin, protocadherin 7

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST cerebrum:45.20 cerebellum:18.40 brain stem:63.60 corpus callosum/glia:- pineal gland:- peripheral nerve:38.20 spine:47.30 retina:32.10 eye:22.80 artery/aorta:253.20 vein:- lymphnode:- peripheral blood:- spleen:- thymus:19.80 bone marrow:- adipose:- bone:- skin:-
GeneChip cerebrum:3.87 cerebellum:3.62 brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:3.93 spine:4.16 retina:3.74 eye:4.78 artery/aorta:- vein:6.86 lymphnode:5.41 peripheral blood:- spleen:4.02 thymus:- bone marrow:3.81 adipose:4.52 bone:5.17 skin:8.23
CAGE cerebrum:2.94 cerebellum:- brain stem:3.88 corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:3.90 retina:- eye:- artery/aorta:4.61 vein:- lymphnode:3.03 peripheral blood:- spleen:0.86 thymus:1.43 bone marrow:- adipose:- bone:1.84 skin:3.94
RNA-seq cerebrum:1.89 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:- peripheral blood:- spleen:- thymus:- bone marrow:- adipose:- bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST uterus:43.60 placenta:- prostate:92.60 ovary:- testis:- heart:74.40 muscle:- esophagus:- stomach:- intestine:- colon:-     liver/hepato:27.20        lung:-    bladder:- kidney:- pituitary:- thyroid/parathyroid:- adrenal gland:- pancreas:- breast:16.30 salivary:-
GeneChip uterus:6.19 placenta:4 prostate:4.02 ovary:5.97 testis:3.72 heart:5.54 muscle:3.92 esophagus:- stomach:4.03 intestine:3.97 colon:- liver/hepato:3.57 lung:3.98 bladder:5.52 kidney:3.99 pituitary:4 thyroid/parathyroid:- adrenal gland:3.76 pancreas:3.76 breast:4.33 salivary:4.36
CAGE uterus:4.14 placenta:2.01 prostate:1.41 ovary:3.69 testis:0.45 heart:- muscle:- esophagus:- stomach:2.04 intestine:2.13 colon:2.27     liver/hepato:0.91    lung:2.13 bladder:3.97 kidney:- pituitary:2.14 thyroid/parathyroid:- adrenal gland:0.85 pancreas:1.61 breast:2.26 salivary:-
RNA-seq uterus:- placenta:- prostate:- ovary:- testis:- heart:- muscle:1.06 esophagus:- stomach:- intestine:- colon:-     liver/hepato:0.72        lung:-    bladder:- kidney:- pituitary:- thyroid/parathyroid:- adrenal gland:- pancreas:- breast:- salivary:-

Gene Information

IDs

Refseq ID NM_018764
Gene ID 54216
Unigene ID Mm.332387
Probe set ID 1449249_at  [Mouse430_2]
Ensembl ID ENSMUSG00000029108

Orthologous Gene

Human[6]  NM_001173523, NM_002589, NM_032456, NM_032457
Rat [0]  

Chromosomal Region

5C1  [58,109,260  -  58,520,590]

Gene Family (Interpro ID)

IPR002126  Cadherin
IPR015919  Cadherin-like

Link to Pubmed  (Pubmed ID)

8889548
9615233
10349636
10565544
10922068
11042159
11076861
11217851
12466851
12477932
15905963
16141072
16141073
16602821
18167345
21267068
21440680
22415368
22711842
23920377

Gene Ontology  (GO ID)

Biological Process

GO:0008150  biological_process
GO:0007155  cell adhesion

Cellular Component

GO:0016021  integral to membrane
GO:0005887  integral to plasma membrane
GO:0016020  membrane

Molecular Function

GO:0005515  protein binding