SAM domain and HD domain, 1

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Synonym

Interferon-gamma-inducible protein Mg11, Mg11, SAM domain and HD domain-containing protein 1, Samhd1, E330031J07Rik, SAM domain and HD domain, 1

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST cerebrum:36.50 cerebellum:- brain stem:63.60 corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:32.10 eye:83.60 artery/aorta:- vein:- lymphnode:97.20 peripheral blood:330.70 spleen:632 thymus:138.30 bone marrow:602.60 adipose:638.20 bone:100.20 skin:31.70
GeneChip cerebrum:6.17 cerebellum:6.65 brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:7.21 spine:6.26 retina:7.10 eye:7.73 artery/aorta:- vein:8.04 lymphnode:11.57 peripheral blood:- spleen:11.32 thymus:- bone marrow:10.43 adipose:8.04 bone:10.22 skin:8
CAGE cerebrum:2.15 cerebellum:- brain stem:2.43 corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:2.73 retina:- eye:- artery/aorta:4.69 vein:- lymphnode:6.77 peripheral blood:- spleen:5.45 thymus:4.39 bone marrow:- adipose:- bone:5.96 skin:3.91
RNA-seq cerebrum:2.40 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:- peripheral blood:- spleen:- thymus:- bone marrow:- adipose:- bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST uterus:87.20 placenta:82.80 prostate:- ovary:91.90 testis:14.80 heart:74.40 muscle:71 esophagus:- stomach:- intestine:- colon:70.50     liver/hepato:45.30        lung:160.70    bladder:198.50 kidney:32.20 pituitary:25.80 thyroid/parathyroid:- adrenal gland:- pancreas:- breast:176.30 salivary:54
GeneChip uterus:8.43 placenta:8.49 prostate:7.99 ovary:8.37 testis:7.11 heart:7.55 muscle:8.12 esophagus:- stomach:7.73 intestine:8.65 colon:- liver/hepato:7.51 lung:9.94 bladder:8.02 kidney:7.15 pituitary:6.90 thyroid/parathyroid:- adrenal gland:7.89 pancreas:7.38 breast:9.05 salivary:8.34
CAGE uterus:4.00 placenta:5.37 prostate:3.76 ovary:3.91 testis:2.92 heart:- muscle:- esophagus:- stomach:4.31 intestine:4.56 colon:4.85     liver/hepato:3.69    lung:5.76 bladder:4.25 kidney:- pituitary:3.29 thyroid/parathyroid:- adrenal gland:4.02 pancreas:3.68 breast:4.27 salivary:-
RNA-seq uterus:- placenta:- prostate:- ovary:- testis:- heart:- muscle:3.68 esophagus:- stomach:- intestine:- colon:-     liver/hepato:3.01        lung:-    bladder:- kidney:- pituitary:- thyroid/parathyroid:- adrenal gland:- pancreas:- breast:- salivary:-

Gene Information

IDs

Refseq ID NM_001139520
Gene ID 56045
Unigene ID Mm.248478
Probe set ID 1418131_at  [Mouse430_2]
Ensembl ID ENSMUSG00000027639

Orthologous Gene

Human[1]  NM_015474
Rat[1]  NM_015474

Chromosomal Region

2H1  [156,923,265  -  156,961,001]

Gene Family (Interpro ID)

IPR003607  Metal-dependent phosphohydrolase, HD domain
IPR001660  Sterile alpha motif
IPR010993  Sterile alpha motif homology
IPR013761  Sterile alpha motif-type

Link to Pubmed  (Pubmed ID)

7884320
10349636
10922068
11042159
11064105
11076861
11217851
12466851
12477932
14610273
15489334
15769905
16141072
16141073
16602821
17015433
21267068
21677750
22069334
23076149
23872947
23972988
24035396

Gene Ontology  (GO ID)

Biological Process

GO:0051607  defense response to virus
GO:0045087  innate immune response
GO:0045088  regulation of innate immune response

Cellular Component

GO:0005634  nucleus

Molecular Function

GO:0003824  catalytic activity
GO:0016787  hydrolase activity
GO:0046872  metal ion binding
GO:0003676  nucleic acid binding
GO:0008081  phosphoric diester hydrolase activity
GO:0003723  RNA binding