RNA binding motif protein 8a

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Synonym

Rbm8a, RNA-binding motif protein 8A, 2310057C03Rik, Rbm8, Ribonucleoprotein RBM8A, RNA binding motif protein 8a, RNA-binding protein 8A, AA673428

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST cerebrum:85.10 cerebellum:18.40 brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:76.40 spine:189.10 retina:96.40 eye:76 artery/aorta:- vein:- lymphnode:- peripheral blood:- spleen:- thymus:59.30 bone marrow:- adipose:- bone:37.60 skin:15.80
GeneChip cerebrum:9.05 cerebellum:9.33 brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:9.62 spine:8.98 retina:9.43 eye:9.90 artery/aorta:- vein:10.34 lymphnode:10.45 peripheral blood:- spleen:10.15 thymus:- bone marrow:10.82 adipose:9.83 bone:10.91 skin:10.50
CAGE cerebrum:1.54 cerebellum:- brain stem:1.68 corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:1.79 retina:- eye:- artery/aorta:0.83 vein:- lymphnode:1.28 peripheral blood:- spleen:1.52 thymus:1.17 bone marrow:- adipose:- bone:1.30 skin:1.50
RNA-seq cerebrum:17.23 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:- peripheral blood:- spleen:- thymus:- bone marrow:- adipose:- bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST uterus:43.60 placenta:13.80 prostate:123.50 ovary:46 testis:88.70 heart:- muscle:- esophagus:- stomach:- intestine:73.90 colon:88.10     liver/hepato:18.10        lung:-    bladder:- kidney:- pituitary:77.50 thyroid/parathyroid:112.50 adrenal gland:- pancreas:37.50 breast:26.10 salivary:-
GeneChip uterus:10.24 placenta:10.35 prostate:10.19 ovary:10.27 testis:9.48 heart:9.23 muscle:9.56 esophagus:- stomach:9.72 intestine:10.16 colon:- liver/hepato:9.79 lung:10.13 bladder:9.96 kidney:9.47 pituitary:9.96 thyroid/parathyroid:- adrenal gland:10.08 pancreas:9.18 breast:9.98 salivary:9.92
CAGE uterus:1.50 placenta:1.95 prostate:1.29 ovary:1.23 testis:0.99 heart:- muscle:- esophagus:- stomach:1.75 intestine:1.60 colon:1.03     liver/hepato:1.45    lung:1.05 bladder:1.26 kidney:- pituitary:1.69 thyroid/parathyroid:- adrenal gland:1.55 pancreas:0 breast:1.70 salivary:-
RNA-seq uterus:- placenta:- prostate:- ovary:- testis:- heart:- muscle:5.42 esophagus:- stomach:- intestine:- colon:-     liver/hepato:12.48        lung:-    bladder:- kidney:- pituitary:- thyroid/parathyroid:- adrenal gland:- pancreas:- breast:- salivary:-

Gene Information

IDs

Refseq ID NM_001102407
Gene ID 60365
Unigene ID Mm.261972
Probe set ID 1418119_at  [Mouse430_2]
Ensembl ID ENSMUSG00000038374

Orthologous Gene

Human[4]  NM_005105
Rat[4]  NM_005105

Chromosomal Region

3F2.1  [96,433,851  -  96,437,702]

Gene Family (Interpro ID)

IPR000504  RNA recognition motif, RNP-1

Link to Pubmed  (Pubmed ID)

7671812
8889548
10349636
10662555
11030346
11042159
11076861
11217851
11753387
12466851
12477932
14610273
15489334
16033648
16141072
16141073
21267068
21677750
22922362
23638902
24416299
24457600

Gene Ontology  (GO ID)

Biological Process

GO:0000184  nuclear-transcribed mRNA catabolic process, nonsense-mediated decay

Cellular Component

GO:0071013  catalytic step 2 spliceosome
GO:0035145  exon-exon junction complex
GO:0005634  nucleus

Molecular Function

GO:0003729  mRNA binding