small nuclear ribonucleoprotein 40 (U5)

 jump to detail

Synonym

Prp8bp, 0610009C03Rik, Wdr57, WD repeat domain 57 (U5 snRNP specific), WD repeat protein 57

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST cerebrum:39.90 cerebellum:- brain stem:31.80 corpus callosum/glia:- pineal gland:- peripheral nerve:38.20 spine:141.90 retina:128.60 eye:76 artery/aorta:- vein:- lymphnode:43.20 peripheral blood:71.90 spleen:26.30 thymus:69.20 bone marrow:230.80 adipose:- bone:87.70 skin:63.30
GeneChip cerebrum:7.82 cerebellum:7.89 brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:7.47 spine:6.81 retina:8.54 eye:8.56 artery/aorta:- vein:8.93 lymphnode:8.87 peripheral blood:- spleen:8.30 thymus:- bone marrow:9.55 adipose:7.97 bone:10.11 skin:8.37
CAGE cerebrum:3.36 cerebellum:- brain stem:3.03 corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:2.82 retina:- eye:- artery/aorta:2.74 vein:- lymphnode:3.58 peripheral blood:- spleen:4.17 thymus:4.08 bone marrow:- adipose:- bone:3.85 skin:3.39
RNA-seq cerebrum:5.45 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:- peripheral blood:- spleen:- thymus:- bone marrow:- adipose:- bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST uterus:87.20 placenta:96.70 prostate:61.80 ovary:80.40 testis:66.50 heart:37.20 muscle:- esophagus:- stomach:32.70 intestine:554.60 colon:35.20     liver/hepato:45.30        lung:60.30    bladder:264.70 kidney:72.50 pituitary:38.80 thyroid/parathyroid:- adrenal gland:- pancreas:56.30 breast:35.90 salivary:-
GeneChip uterus:8.14 placenta:8.15 prostate:8.40 ovary:8.38 testis:8.44 heart:7.50 muscle:7.02 esophagus:- stomach:7.91 intestine:8.27 colon:- liver/hepato:6.59 lung:7.82 bladder:8.02 kidney:7.21 pituitary:7.99 thyroid/parathyroid:- adrenal gland:8.69 pancreas:6.58 breast:8.25 salivary:8.07
CAGE uterus:3.42 placenta:3.54 prostate:3.32 ovary:3.37 testis:3.69 heart:- muscle:- esophagus:- stomach:3.36 intestine:3.73 colon:3.53     liver/hepato:2.83    lung:3.27 bladder:3.05 kidney:- pituitary:3.29 thyroid/parathyroid:- adrenal gland:3.30 pancreas:2.75 breast:3.30 salivary:-
RNA-seq uterus:- placenta:- prostate:- ovary:- testis:- heart:- muscle:3.86 esophagus:- stomach:- intestine:- colon:-     liver/hepato:2.25        lung:-    bladder:- kidney:- pituitary:- thyroid/parathyroid:- adrenal gland:- pancreas:- breast:- salivary:-

Gene Information

IDs

Refseq ID NM_025645
Gene ID 66585
Unigene ID Mm.423019
Probe set ID 1452713_a_at  [Mouse430_2]
Ensembl ID ENSMUSG00000074088

Orthologous Gene

Human[1]  NM_004814
Rat [0]  

Chromosomal Region

-

Gene Family (Interpro ID)

IPR020472  G-protein beta WD-40 repeat, region
IPR001680  WD40 repeat
IPR019782  WD40 repeat 2
IPR019781  WD40 repeat, subgroup
IPR011046  WD40 repeat-like-containing domain
IPR017986  WD40-repeat-containing domain
IPR015943  WD40/YVTN repeat-like-containing domain

Link to Pubmed  (Pubmed ID)

10349636
10922068
11042159
11076861
11217851
12466851
12477932
12520002
12819125
12904583
14610273
15489334
15782199
16141072
16141073
21267068
21677750

Gene Ontology  (GO ID)

Biological Process

GO:0006397  mRNA processing
GO:0008380  RNA splicing

Cellular Component

GO:0071013  catalytic step 2 spliceosome
GO:0005737  cytoplasm
GO:0005634  nucleus
GO:0005681  spliceosomal complex

Molecular Function

GO:0003674  molecular_function