LIM and calponin homology domains 1

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Synonym

RIKEN cDNA 3732412D22 gene, mKIAA1102, 3732412D22Rik

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST nodata
GeneChip cerebrum:10.01 cerebellum:10 brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:10.35 spine:10.15 retina:10.70 eye:8.96 artery/aorta:- vein:8.62 lymphnode:6.86 peripheral blood:- spleen:8.95 thymus:- bone marrow:6.60 adipose:8.48 bone:9.12 skin:9.45
CAGE cerebrum:4.03 cerebellum:- brain stem:4.23 corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:4.50 retina:- eye:- artery/aorta:3.96 vein:- lymphnode:1.41 peripheral blood:- spleen:2.26 thymus:2.19 bone marrow:- adipose:- bone:2.88 skin:3.13
RNA-seq cerebrum:5.26 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:- peripheral blood:- spleen:- thymus:- bone marrow:- adipose:- bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST nodata
GeneChip uterus:6.43 placenta:7.75 prostate:10.31 ovary:7.50 testis:5.90 heart:10.84 muscle:10.12 esophagus:- stomach:5.98 intestine:6.03 colon:- liver/hepato:5.17 lung:12.95 bladder:7.59 kidney:8.71 pituitary:9.31 thyroid/parathyroid:- adrenal gland:10.28 pancreas:6.66 breast:8.34 salivary:8.03
CAGE uterus:1.69 placenta:2.22 prostate:5.10 ovary:2.39 testis:2.85 heart:- muscle:- esophagus:- stomach:1.75 intestine:1.05 colon:1.46     liver/hepato:1.02    lung:6.03 bladder:2.55 kidney:- pituitary:3.84 thyroid/parathyroid:- adrenal gland:4.00 pancreas:2.19 breast:1.98 salivary:-
RNA-seq uterus:- placenta:- prostate:- ovary:- testis:- heart:- muscle:4.46 esophagus:- stomach:- intestine:- colon:-     liver/hepato:0.75        lung:-    bladder:- kidney:- pituitary:- thyroid/parathyroid:- adrenal gland:- pancreas:- breast:- salivary:-

Gene Information

IDs

Refseq ID NM_001001980
Gene ID 77569
Unigene ID -
Probe set ID 1435321_at  [Mouse430_2]
Ensembl ID ENSMUSG00000037736

Orthologous Gene

Human[15]  NM_001112717, NM_001112718, NM_001112719, NM_001112720, NM_014988
Rat [0]  

Chromosomal Region

-

Gene Family (Interpro ID)

IPR001997  Calponin
IPR016146  Calponin-homology
IPR001715  Calponin-like actin-binding
IPR003096  SM22/calponin

Link to Pubmed  (Pubmed ID)

8889548
10349636
11042159
11076861
11217851
12466851
12477932
12693553
14610273
15142957
15782199
16141072
16141073
16602821
18973680
19268448
21267068
21338885
24457600

Gene Ontology  (GO ID)

Biological Process

GO:0031032  actomyosin structure organization
GO:0008150  biological_process

Cellular Component

GO:0005575  cellular_component

Molecular Function

GO:0003779  actin binding
GO:0046872  metal ion binding
GO:0003674  molecular_function
GO:0008270  zinc ion binding