serine palmitoyltransferase, long chain base subunit 1

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Synonym

-

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST cerebrum:35.90 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:36.90 spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:- peripheral blood:- spleen:- thymus:122.90 bone marrow:- adipose:- bone:39 skin:-
GeneChip cerebrum:7.80 cerebellum:7.62 brain stem:7.71 corpus callosum/glia:- pineal gland:- peripheral nerve:7.75 spine:- retina:- eye:8.06 artery/aorta:- vein:- lymphnode:- peripheral blood:- spleen:7.71 thymus:7.89 bone marrow:7.75 adipose:- bone:- skin:-
CAGE nodata
RNA-seq nodata
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST uterus:- placenta:119.50 prostate:38 ovary:342.30 testis:- heart:38.80 muscle:- esophagus:- stomach:- intestine:104.70 colon:-     liver/hepato:66.50        lung:50.70    bladder:- kidney:127.60 pituitary:118.40 thyroid/parathyroid:- adrenal gland:- pancreas:227.60 breast:- salivary:-
GeneChip uterus:- placenta:- prostate:- ovary:- testis:- heart:7.41 muscle:7.32 esophagus:- stomach:- intestine:7.79 colon:7.75 liver/hepato:- lung:- bladder:- kidney:7.51 pituitary:7.87 thyroid/parathyroid:- adrenal gland:- pancreas:- breast:- salivary:-
CAGE nodata
RNA-seq nodata

Gene Information

IDs

Refseq ID NM_001108406
Gene ID 361213
Unigene ID Rn.18996
Probe set ID rc_AA892380_at  [RG_U34A]
Ensembl ID ENSRNOG00000010882

Orthologous Gene

Human[2]  NM_006415, NM_178324
Mouse[3]  NM_009269, NM_178324

Chromosomal Region

17p14  [17,576,401  -  17,615,246]

Gene Family (Interpro ID)

IPR004839  Aminotransferase, class I/II
IPR015424  Pyridoxal phosphate-dependent transferase, major domain

Link to Pubmed  (Pubmed ID)

11816724
18922131

Gene Ontology  (GO ID)

Biological Process

GO:0046513  ceramide biosynthetic process
GO:0046511  sphinganine biosynthetic process
GO:0006686  sphingomyelin biosynthetic process
GO:0046512  sphingosine biosynthetic process

Cellular Component

GO:0017059  serine C-palmitoyltransferase complex

Molecular Function

GO:0030170  pyridoxal phosphate binding
GO:0004758  serine C-palmitoyltransferase activity