cold shock domain protein A

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Synonym

-

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST cerebrum:47.90 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:36.90 spine:- retina:- eye:177.70 artery/aorta:- vein:- lymphnode:- peripheral blood:- spleen:702 thymus:- bone marrow:- adipose:147.20 bone:273.30 skin:-
GeneChip cerebrum:7.80 cerebellum:7.70 brain stem:7.43 corpus callosum/glia:- pineal gland:- peripheral nerve:7.62 spine:- retina:- eye:9.86 artery/aorta:- vein:- lymphnode:- peripheral blood:- spleen:10.42 thymus:8.91 bone marrow:11.63 adipose:- bone:- skin:-
CAGE nodata
RNA-seq nodata
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST uterus:- placenta:477.90 prostate:189.80 ovary:114.10 testis:494.10 heart:155.10 muscle:1594.50 esophagus:- stomach:- intestine:- colon:-     liver/hepato:79.80        lung:152    bladder:1129.90 kidney:- pituitary:59.20 thyroid/parathyroid:- adrenal gland:- pancreas:- breast:- salivary:-
GeneChip uterus:- placenta:- prostate:- ovary:- testis:- heart:9.65 muscle:11.24 esophagus:- stomach:- intestine:8.59 colon:10.18 liver/hepato:- lung:- bladder:- kidney:8.88 pituitary:8.84 thyroid/parathyroid:- adrenal gland:- pancreas:- breast:- salivary:-
CAGE nodata
RNA-seq nodata

Gene Information

IDs

Refseq ID NM_031979
Gene ID 83807
Unigene ID Rn.3306
Probe set ID D28557_s_at  [RG_U34A]
Ensembl ID ENSRNOG00000005480

Orthologous Gene

Human[4]  NM_001145426, NM_003651
Mouse[4]  NM_011733, NM_139117

Chromosomal Region

4q42  [169,076,514  -  169,099,854]

Gene Family (Interpro ID)

IPR011129  Cold shock protein
IPR002059  Cold-shock protein, DNA-binding
IPR007118  Expansin/Lol pI
IPR005795  Major pollen allergen Lol pI
IPR016027  Nucleic acid-binding, OB-fold-like

Link to Pubmed  (Pubmed ID)

8029009
8636158
11675468
11750989
12477932
15592429
16650609

Gene Ontology  (GO ID)

Biological Process

GO:0071474  cellular hyperosmotic response
GO:0071356  cellular response to tumor necrosis factor
GO:0009566  fertilization
GO:0001701  in utero embryonic development
GO:0008584  male gonad development
GO:0043066  negative regulation of apoptosis
GO:0060547  negative regulation of necrotic cell death
GO:0048642  negative regulation of skeletal muscle tissue development
GO:0000122  negative regulation of transcription from RNA polymerase II promoter
GO:0031100  organ regeneration
GO:0046622  positive regulation of organ growth
GO:0006355  regulation of transcription, DNA-dependent
GO:0007283  spermatogenesis
GO:0006351  transcription, DNA-dependent

Cellular Component

GO:0005737  cytoplasm
GO:0005921  gap junction
GO:0005634  nucleus
GO:0005844  polysome
GO:0030529  ribonucleoprotein complex

Molecular Function

GO:0003677  DNA binding
GO:0003730  mRNA 3'-UTR binding
GO:0003697  single-stranded DNA binding