synaptojanin 1

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Synonym

-

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST cerebrum:323 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:258.10 spine:- retina:- eye:213.20 artery/aorta:- vein:- lymphnode:- peripheral blood:- spleen:- thymus:122.90 bone marrow:- adipose:- bone:39 skin:-
GeneChip cerebrum:7.83 cerebellum:8.25 brain stem:8.22 corpus callosum/glia:- pineal gland:- peripheral nerve:7.11 spine:- retina:- eye:6.78 artery/aorta:- vein:- lymphnode:- peripheral blood:- spleen:6.76 thymus:6.83 bone marrow:7.01 adipose:- bone:- skin:-
CAGE nodata
RNA-seq nodata
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST uterus:- placenta:39.80 prostate:38 ovary:114.10 testis:164.70 heart:58.20 muscle:- esophagus:- stomach:- intestine:104.70 colon:-     liver/hepato:-        lung:50.70    bladder:- kidney:63.80 pituitary:236.90 thyroid/parathyroid:- adrenal gland:- pancreas:- breast:- salivary:-
GeneChip uterus:- placenta:- prostate:- ovary:- testis:- heart:6.72 muscle:7.09 esophagus:- stomach:- intestine:6.83 colon:6.61 liver/hepato:- lung:- bladder:- kidney:6.98 pituitary:7.40 thyroid/parathyroid:- adrenal gland:- pancreas:- breast:- salivary:-
CAGE nodata
RNA-seq nodata

Gene Information

IDs

Refseq ID NM_053476
Gene ID 85238
Unigene ID Rn.22685
Probe set ID AJ006855_s_at  [RG_U34A]
Ensembl ID ENSRNOG00000002051

Orthologous Gene

Human[7]  NM_001160302, NM_001160306, NM_003895, NM_203446
Mouse[2]  NM_001045515, NM_001164483, NM_003895, NM_203446

Chromosomal Region

11q11  [30,921,849  -  30,997,674]

Gene Family (Interpro ID)

IPR005135  Endonuclease/exonuclease/phosphatase
IPR000300  Inositol polyphosphate related phosphatase
IPR000504  RNA recognition motif, RNP-1
IPR017997  Vinculin
IPR006077  Vinculin/alpha-catenin

Link to Pubmed  (Pubmed ID)

8552192
8798761
9195986
9238017
9341169
9428629
9694653
9710239
9813051
9931483
9950691
10764144
11498538
11665617
14704270
15659545
15821731
17257598
17762867
19282871
20448150
22871113

Gene Ontology  (GO ID)

Biological Process

GO:0007420  brain development
GO:0006897  endocytosis
GO:0046855  inositol phosphate dephosphorylation
GO:0007612  learning
GO:0006836  neurotransmitter transport
GO:0046488  phosphatidylinositol metabolic process
GO:0046856  phosphoinositide dephosphorylation
GO:0014015  positive regulation of gliogenesis
GO:0048260  positive regulation of receptor-mediated endocytosis
GO:0034097  response to cytokine stimulus
GO:0032526  response to retinoic acid
GO:0048488  synaptic vesicle endocytosis
GO:0016082  synaptic vesicle priming
GO:0048489  synaptic vesicle transport
GO:0016191  synaptic vesicle uncoating

Cellular Component

GO:0005737  cytoplasm
GO:0030117  membrane coat
GO:0043005  neuron projection
GO:0043234  protein complex

Molecular Function

GO:0003676  nucleic acid binding
GO:0000166  nucleotide binding
GO:0004439  phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity
GO:0034595  phosphoinositide 5-phosphatase activity
GO:0042578  phosphoric ester hydrolase activity
GO:0005515  protein binding
GO:0008022  protein C-terminus binding
GO:0032403  protein complex binding
GO:0003723  RNA binding
GO:0017124  SH3 domain binding