nucleoporin 50kDa

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Synonym

PRO1146, nucleoporin 50kD, NUP50, nucleoporin 50kDa, NPAP60L, NPAP60, Nucleoporin 50 kDa, MGC39961, Nuclear pore-associated protein 60 kDa-like

Expression Pattern

Choropleth map on BodyParts3D

Choropleth maps on 3D human body images were generated by the relative gene expression values measured by GeneChip.

Classification in 40 Organs

brain blood connective
EST nodata
GeneChip cerebrum:3.48 cerebellum:3.45 brain stem:3.34 corpus callosum/glia:3.38 pineal gland:- peripheral nerve:3.19 spine:3.31 retina:- eye:- artery/aorta:3.39 vein:3.44 lymphnode:3.32 peripheral blood:- spleen:3.14 thymus:3.27 bone marrow:3.29 adipose:3.49 bone:- skin:3.58
CAGE cerebrum:1.40 cerebellum:- brain stem:1.66 corpus callosum/glia:1.34 pineal gland:1.67 peripheral nerve:- spine:1.34 retina:- eye:- artery/aorta:1.33 vein:1.86 lymphnode:1.95 peripheral blood:- spleen:2.23 thymus:2.82 bone marrow:- adipose:1.60 bone:- skin:-
RNA-seq cerebrum:1.86 cerebellum:- brain stem:- corpus callosum/glia:- pineal gland:- peripheral nerve:- spine:- retina:- eye:- artery/aorta:- vein:- lymphnode:1.76 peripheral blood:- spleen:- thymus:- bone marrow:- adipose:3.00 bone:- skin:-
reproductive muscular alimentary liver lung urinary endo/exo-crine
EST nodata
GeneChip uterus:3.32 placenta:3.29 prostate:3.19 ovary:3.44 testis:3.29 heart:3.48 muscle:3.53 esophagus:3.59 stomach:3.31 intestine:3.37 colon:3.35 liver/hepato:3.47 lung:3.27 bladder:- kidney:3.33 pituitary:3.36 thyroid/parathyroid:3.27 adrenal gland:3.38 pancreas:3.44 breast:3.41 salivary:3.45
CAGE uterus:1.51 placenta:1.82 prostate:1.85 ovary:1.48 testis:2.25 heart:1.12 muscle:0.40 esophagus:1.59 stomach:- intestine:2.17 colon:1.31     liver/hepato:1.63    lung:1.66 bladder:0.91 kidney:1.73 pituitary:1.95 thyroid/parathyroid:1.79 adrenal gland:- pancreas:0.94 breast:1.80 salivary:1.49
RNA-seq uterus:- placenta:- prostate:1.70 ovary:1.74 testis:1.93 heart:0.84 muscle:1.39 esophagus:- stomach:- intestine:- colon:2.14     liver/hepato:1.39        lung:2.04    bladder:- kidney:1.78 pituitary:- thyroid/parathyroid:1.95 adrenal gland:1.87 pancreas:- breast:2.04 salivary:-

Gene Information

IDs

Refseq ID NM_007172
Gene ID 10762
Unigene ID -
Probe set ID 218293_x_at  [HG-U133_Plus_2]
Ensembl ID ENSG00000093000
GTEx ID ENSG00000093000

Orthologous Gene

Mouse[3]  NM_016714
Rat [0]  

Chromosomal Region

22q13.31  [45,559,722  -  45,583,892]

Gene Family (Interpro ID)

IPR011993  Pleckstrin homology-type
IPR000156  Ran binding protein 1

Link to Pubmed  (Pubmed ID)

10449902
10591208
10601273
10891499
10891500
11447110
12176322
12228227
12361592
12477932
12802065
14702039
15461802
15489334
16648475
16964243
17081983
18854154
19596235
20016008
20360068
20379614
21139048
21145461
21832049
21890473
21906983
22130666
22412018
22505724
22863883
22939629
23000965
23007389
23602568
23752268
24250222
24816145

Gene Ontology  (GO ID)

Biological Process

GO:0005975  carbohydrate metabolic process
GO:0019221  cytokine-mediated signaling pathway
GO:0015758  glucose transport
GO:0008645  hexose transport
GO:0046907  intracellular transport
GO:0000278  mitotic cell cycle
GO:0007077  mitotic nuclear envelope disassembly
GO:0051028  mRNA transport
GO:0015031  protein transport
GO:0010827  regulation of glucose transport
GO:0055085  transmembrane transport
GO:0016032  viral reproduction

Cellular Component

GO:0031965  nuclear membrane
GO:0005643  nuclear pore
GO:0005654  nucleoplasm

Molecular Function

GO:0005515  protein binding